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TAPG2 abscission polygalacturonase [ Solanum lycopersicum (tomato) ]

Gene ID: 544188, updated on 9-Nov-2023

Summary

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Gene symbol
TAPG2
Gene description
abscission polygalacturonase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See TAPG2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (38337321..38338937)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (37769606..37771222)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101260896 Neighboring gene polygalacturonase 1 Neighboring gene polygalacturonase-like Neighboring gene polygalacturonase 3 Neighboring gene uncharacterized LOC112940929

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Three different polygalacturonases are expressed in tomato leaf and flower abscission, each with a different temporal expression pattern. Kalaitzis P, et al. Plant Physiol, 1997 Apr. PMID 9112778, Free PMC Article
  2. Genomic organization of six tomato polygalacturonases and 5' upstream sequence identity with tap1 and win2 genes. Hong SB, et al. Mol Gen Genet, 1998 Jun. PMID 9669329

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
abscission polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247604.3 → NP_001234533.1  abscission polygalacturonase precursor

    See identical proteins and their annotated locations for NP_001234533.1

    Status: VALIDATED

    Source sequence(s)
    AEKE03003138, U70480
    UniProtKB/TrEMBL
    Q40135, Q96487
    Conserved Domains (2) summary
    pfam00295
    Location:50 → 375
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:3 → 389
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    38337321..38338937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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