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LOC544156 54-kD signal recognition particle (SRP) specific protein [ Solanum lycopersicum (tomato) ]

Gene ID: 544156, updated on 1-Nov-2024

Summary

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Gene symbol
LOC544156
Gene description
54-kD signal recognition particle (SRP) specific protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SRP54
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Genomic context

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See LOC544156 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (60127601..60133625, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (59102026..59108050, complement)

Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101259719 Neighboring gene uncharacterized LOC138340476 Neighboring gene VQ motif-containing protein 11-like Neighboring gene uncharacterized LOC101248555 Neighboring gene protein TOO MANY MOUTHS

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional characterisation of the signal recognition particle-specific 54 kDa protein (SRP54) of tomato. Krolkiewicz S, et al. Mol Gen Genet, 1994 Dec 1. PMID 7808407
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle subunit SRP54 2
Names
signal recognition particle 54 kDa protein 2
NP_001234428.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247499.2 → NP_001234428.1  signal recognition particle subunit SRP54 2

    See identical proteins and their annotated locations for NP_001234428.1

    Status: PROVISIONAL

    Source sequence(s)
    Z34527
    UniProtKB/Swiss-Prot
    P49971, P49972
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 428
    SRP54_euk; signal recognition particle protein SRP54

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

    Range
    60127601..60133625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49972.1 GenPept UniProtKB/Swiss-Prot:P49972

Gene LinkOut

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