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CHI17 chitinase [ Solanum lycopersicum (tomato) ]

Gene ID: 544147, updated on 9-Nov-2023

Summary

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Gene symbol
CHI17
Gene description
chitinase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See CHI17 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (47109634..47110921)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (46554374..46555661)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene probable acyl-activating enzyme 1, peroxisomal Neighboring gene chitinase Neighboring gene protein trichome birefringence-like 34 Neighboring gene protein trichome birefringence-like 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of four chitinase cDNAs obtained from Cladosporium fulvum-infected tomato. Danhash N, et al. Plant Mol Biol, 1993 Sep. PMID 8400122
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic 27 kDa endochitinase
Names
acidic extracellular 27 kD chitinase
NP_001234400.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247471.1 → NP_001234400.1  acidic 27 kDa endochitinase precursor

    See identical proteins and their annotated locations for NP_001234400.1

    Status: PROVISIONAL

    Source sequence(s)
    Z15139
    UniProtKB/Swiss-Prot
    Q05540
    Conserved Domains (2) summary
    cd00325
    Location:23 → 238
    chitinase_glyco_hydro_19; Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some ...
    pfam00182
    Location:22 → 238
    Glyco_hydro_19; Chitinase class I

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    47109634..47110921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q05540.1 GenPept UniProtKB/Swiss-Prot:Q05540

Gene LinkOut

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Molecular Biology Databases