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cellulase endo-1,4-beta-glucanase precursor [ Solanum lycopersicum (tomato) ]

Gene ID: 543999, updated on 9-Nov-2023

Summary

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Gene symbol
cellulase
Gene description
endo-1,4-beta-glucanase precursor
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See cellulase in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 9 NC_015446.3 (67512217..67515597)
102 previous assembly SL2.50 (GCF_000188115.3) 9 NC_015446.2 (67086919..67090299)

Chromosome 9 - NC_015446.3Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 7 Neighboring gene pectinesterase-like Neighboring gene 39S ribosomal protein L46, mitochondrial Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nature and regulation of pistil-expressed genes in tomato. Milligan SB, et al. Plant Mol Biol, 1995 Jul. PMID 7647301

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endo-1,4-beta-glucanase precursor
NP_001234882.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247953.2 → NP_001234882.1  endo-1,4-beta-glucanase precursor

    See identical proteins and their annotated locations for NP_001234882.1

    Status: VALIDATED

    Source sequence(s)
    AEKE03003145, AW650214, U20590
    UniProtKB/TrEMBL
    Q42875
    Conserved Domains (2) summary
    PLN02420
    Location:18 → 509
    PLN02420; endoglucanase
    PLN02266
    Location:2 → 510
    PLN02266; endoglucanase

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015446.3 Reference SL3.0 Primary Assembly

    Range
    67512217..67515597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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