U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

spy SPY protein [ Solanum lycopersicum (tomato) ]

Gene ID: 543775, updated on 1-Nov-2024

Summary

Go to the top of the page Help
Gene symbol
spy
Gene description
SPY protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
LeSPY
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See spy in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (4057273..4074477)
103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (3555852..3572848)

Chromosome 9 - NC_090808.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 90-like Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2 Neighboring gene casparian strip membrane protein 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Isolation and characterization of the Spindly homologue from tomato. Greb T, et al. J Exp Bot, 2002 Aug. PMID 12147734
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-GlcNAc transferase
Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
NP_001233937.1
XP_010325708.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247008.2 → NP_001233937.1  protein O-GlcNAc transferase

    See identical proteins and their annotated locations for NP_001233937.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ312094
    UniProtKB/Swiss-Prot
    Q8RVB2
    Conserved Domains (7) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    cd15832
    Location:149 → 204
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:402 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:81 → 147
    TPR_11; TPR repeat
    cl10013
    Location:488 → 846
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:119 → 250
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

    Range
    4057273..4074477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010327406.4 → XP_010325708.1  protein O-GlcNAc transferase isoform X1

    See identical proteins and their annotated locations for XP_010325708.1

    UniProtKB/Swiss-Prot
    Q8RVB2
    Conserved Domains (7) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    cd15832
    Location:149 → 204
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:402 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:81 → 147
    TPR_11; TPR repeat
    cl10013
    Location:488 → 846
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:119 → 250
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RVB2.1 GenPept UniProtKB/Swiss-Prot:Q8RVB2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials