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XOPG1 polygalacturonase [ Solanum lycopersicum (tomato) ]

Gene ID: 543599, updated on 9-Nov-2023

Summary

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Gene symbol
XOPG1
Gene description
polygalacturonase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See XOPG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (67384684..67388839)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (65900464..65904619)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene F-box protein At5g49610 Neighboring gene MAPK kinase substrate protein At1g80180 Neighboring gene metallothiol transferase FosB Neighboring gene pentatricopeptide repeat-containing protein At1g52640, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of a polygalacturonase associated with tomato seed germination. Sitrit Y, et al. Plant Physiol, 1999 Oct. PMID 10517833, Free PMC Article
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase
NP_001234256.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247327.2 → NP_001234256.1  polygalacturonase

    See identical proteins and their annotated locations for NP_001234256.1

    Status: VALIDATED

    Source sequence(s)
    AF138858, AK322878
    UniProtKB/TrEMBL
    A0A3Q7GHE7, Q9M7D3
    Conserved Domains (2) summary
    pfam00295
    Location:90 → 416
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:37 → 446
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    67384684..67388839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases