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LOC543433 carboxyl-terminal-processing peptidase 1, chloroplastic [ Triticum aestivum (bread wheat) ]

Gene ID: 543433, updated on 30-Nov-2023

Summary

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Gene symbol
LOC543433
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum aestivum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Genomic context

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See LOC543433 in Genome Data Viewer
Location:
chromosome: 3B
Exon count:
13
Annotation release Status Assembly Chr Location
100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 3B NC_057801.1 (447518825..447531599)

Chromosome 3B - NC_057801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123070285 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene uncharacterized LOC123070288 Neighboring gene probable receptor-like protein kinase At2g42960

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057801.1 Chromosome 3B Reference IWGSC CS RefSeq v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IWGSC CS RefSeq v2.1 Primary Assembly

Genomic

  1. NC_057801.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Range
    447518825..447531599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044493413.1 → XP_044349348.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3B6FMH4, Q8S3I8
    Conserved Domains (1) summary
    PLN00049
    Location:84 → 441
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_044493411.1 → XP_044349346.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3B6FMH4, Q8S3I8
    Conserved Domains (1) summary
    PLN00049
    Location:84 → 441
    PLN00049; carboxyl-terminal processing protease; Provisional

  3. XM_044493412.1 → XP_044349347.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3B6FMH4, Q8S3I8
    Conserved Domains (1) summary
    PLN00049
    Location:84 → 441
    PLN00049; carboxyl-terminal processing protease; Provisional

  4. XM_044493414.1 → XP_044349349.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A3B6FN33, Q8S3I8
    Conserved Domains (1) summary
    PLN00049
    Location:84 → 406
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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