U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC543432 carboxyl-terminal-processing peptidase 2, chloroplastic [ Triticum aestivum (bread wheat) ]

Gene ID: 543432, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC543432
Gene description
carboxyl-terminal-processing peptidase 2, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum aestivum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Also known as
ctpA
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC543432 in Genome Data Viewer
Location:
chromosome: 5A
Exon count:
12
Annotation release Status Assembly Chr Location
100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 5A NC_057806.1 (560798211..560801542, complement)

Chromosome 5A - NC_057806.1Genomic Context describing neighboring genes Neighboring gene exosome complex component CSL4-like Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene uncharacterized LOC123104768 Neighboring gene ATP synthase subunit alpha, chloroplastic Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_057806.1 Chromosome 5A Reference IWGSC CS RefSeq v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative Temporal Transcriptome Profiling of Wheat near Isogenic Line Carrying Lr57 under Compatible and Incompatible Interactions. Yadav IS, et al. Front Plant Sci, 2016. PMID 28066494, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
carboxyl-terminal-processing peptidase 2, chloroplastic
Names
photosystem II c-terminal processing protease

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IWGSC CS RefSeq v2.1 Primary Assembly

Genomic

  1. NC_057806.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Range
    560798211..560801542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044526650.1 → XP_044382585.1  carboxyl-terminal-processing peptidase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    Q8S3I9
    Conserved Domains (1) summary
    PLN00049
    Location:85 → 470
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_044526651.1 → XP_044382586.1  carboxyl-terminal-processing peptidase 2, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A3B6KP25, Q8S3I9
    Conserved Domains (1) summary
    PLN00049
    Location:84 → 469
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases