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LOC542684 beta-glucanase [ Zea mays ]

Gene ID: 542684, updated on 14-Dec-2023

Summary

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Gene symbol
LOC542684
Gene description
beta-glucanase
Locus tag
ZEAMMB73_Zm00001d013269
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
gla3; GRMZM2G473711
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Genomic context

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See LOC542684 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (7700587..7703384, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (7519316..7521862, complement)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene tousled-like kinase 2 Neighboring gene lysosomal beta glucosidase-like Neighboring gene putative ammonium transporter 4 member 1 Neighboring gene RNA-binding region RNP-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell wall reactive proteins in the coat and wall of maize pollen: potential role in pollen tube growth on the stigma and through the style. Suen DF, et al. J Biol Chem, 2003 Oct 31. PMID 12930826
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucanase
Names
beta-glucanase3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112201.2 → NP_001105671.1  beta-glucanase precursor

    See identical proteins and their annotated locations for NP_001105671.1

    Status: VALIDATED

    Source sequence(s)
    AY344632
    UniProtKB/TrEMBL
    A0A3L6D6P4, A0A3L6EPS2, Q6VB92
    Conserved Domains (2) summary
    COG1472
    Location:45 → 481
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:412 → 625
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    7700587..7703384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035958866.1 → XP_035814759.1  beta-glucanase isoform X1

    UniProtKB/TrEMBL
    A0A3L6D6P4, A0A3L6EPS2, Q6VB92
    Conserved Domains (2) summary
    COG1472
    Location:45 → 481
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:412 → 625
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials