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LOC542462 pectin methylesterase 1 [ Zea mays ]

Gene ID: 542462, updated on 14-Dec-2023

Summary

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Gene symbol
LOC542462
Gene description
pectin methylesterase 1
Locus tag
ZEAMMB73_Zm00001d025588
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
C5; pme1; GRMZM2G125356
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Genomic context

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See LOC542462 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (124835851..124837911, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (123300084..123302144, complement)

Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene uncharacterized LOC109942976 Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene uncharacterized LOC103641717 Neighboring gene bZIP-type transcription factor pseudogene Neighboring gene uncharacterized LOC100383541

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A maize pectin methylesterase-like gene, ZmC5, specifically expressed in pollen. Wakeley PR, et al. Plant Mol Biol, 1998 May. PMID 9620276
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin methylesterase 1
Names
CL1790_1
CL1790_1(750)
ZmC5
pectin methylesterase-like protein
pectin methylesterase1
pectinesterase
pectinesterase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112017.2 → NP_001105487.2  pectin methylesterase 1

    See identical proteins and their annotated locations for NP_001105487.2

    Status: VALIDATED

    Source sequence(s)
    CABHLF010000007
    UniProtKB/TrEMBL
    B4FCY2
    Conserved Domains (1) summary
    cl27601
    Location:48 → 560
    Pectinesterase; Pectinesterase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    124835851..124837911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials