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LOC542342 starch branching enzyme 3 [ Zea mays ]

Gene ID: 542342, updated on 14-Dec-2023

Summary

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Gene symbol
LOC542342
Gene description
starch branching enzyme 3
Locus tag
ZEAMMB73_Zm00001d003817
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
sbe3; Sbe2a; GRMZM2G073054
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Genomic context

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See LOC542342 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (60604055..60614668)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (60752448..60763057)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109944000 Neighboring gene protein HIRA-like Neighboring gene DNA-binding protein S1FA Neighboring gene uncharacterized LOC100193602

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Mutator insertional mutants of starch-branching enzyme 2a in corn. Blauth SL, et al. Plant Physiol, 2001 Mar. PMID 11244119, Free PMC Article
  2. Independent genetic control of maize starch-branching enzymes IIa and IIb. Isolation and characterization of a Sbe2a cDNA. Gao M, et al. Plant Physiol, 1997 May. PMID 9159942, Free PMC Article
  3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in starch metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like
Names
starch branching enzyme 2a
starch branching enzyme IIa
starch branching enzyme isozyme SBEIIa
umc1997

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    60604055..60614668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008671244.2 → XP_008669466.1  1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A1D6EBQ5, A0A1D6EBQ7
    Conserved Domains (1) summary
    PLN02447
    Location:293 → 987
    PLN02447; 1,4-alpha-glucan-branching enzyme
Nucleotide Protein
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