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LBRM_35_5490 putative glycosyl hydrolase [ Leishmania braziliensis MHOM/BR/75/M2904 ]

Gene ID: 5420144, updated on 28-Dec-2023

Summary

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Gene symbol
LBRM_35_5490
Gene description
putative glycosyl hydrolase
Locus tag
LBRM_35_5490
Gene type
protein coding
RNA name
putative glycosyl hydrolase
RefSeq status
PROVISIONAL
Organism
Leishmania braziliensis MHOM/BR/75/M2904 (strain: MHOM/BR/75/M2904)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania braziliensis species complex
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Genomic context

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Location:
chromosome: 36
Exon count:
1
Sequence:
Chromosome: 36; NC_009327.2 (2014416..2017880, complement)

Chromosome 36 - NC_009327.2Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009327.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative glycosyl hydrolase
XP_001569164.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009327.2 Reference assembly

    Range
    2014416..2017880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001569114.2 → XP_001569164.1  putative glycosyl hydrolase [Leishmania braziliensis MHOM/BR/75/M2904]

    See identical proteins and their annotated locations for XP_001569164.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3P3ZJK2, A4HQ39
    Conserved Domains (5) summary
    TIGR02009
    Location:906 → 1096
    PGMB-YQAB-SF; beta-phosphoglucomutase family hydrolase
    COG1554
    Location:24 → 889
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam03632
    Location:449 → 825
    Glyco_hydro_65m; Glycosyl hydrolase family 65 central catalytic domain
    pfam03633
    Location:829 → 867
    Glyco_hydro_65C; Glycosyl hydrolase family 65, C-terminal domain
    pfam03636
    Location:43 → 295
    Glyco_hydro_65N; Glycosyl hydrolase family 65, N-terminal domain
Nucleotide Protein
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