U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zgc:110843 zgc:110843 [ Danio rerio (zebrafish) ]

Gene ID: 541492, updated on 28-Oct-2024

Summary

Official Symbol
zgc:110843provided by ZNC
Official Full Name
zgc:110843provided by ZNC
Primary source
ZFIN:ZDB-GENE-050327-15
See related
Ensembl:ENSDARG00000073845 AllianceGenome:ZFIN:ZDB-GENE-050327-15
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable 2 iron, 2 sulfur cluster binding activity and L-cysteine transaminase activity. Predicted to be involved in intracellular iron ion homeostasis. Predicted to act upstream of or within regulation of autophagy. Predicted to be located in intracellular membrane-bounded organelle and membrane. Predicted to be active in mitochondrial outer membrane. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See zgc:110843 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (7902346..7916683)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (7596224..7610729)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 3, catalytic subunit, beta isozyme Neighboring gene ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Neighboring gene CXXC finger protein 5b Neighboring gene uncharacterized LOC137487563 Neighboring gene zgc:92242

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables L-cysteine transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in intracellular iron ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in mitochondrial outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC541492

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014305.1NP_001014327.1  uncharacterized protein LOC541492

    See identical proteins and their annotated locations for NP_001014327.1

    Status: PREDICTED

    Source sequence(s)
    BC092000
    UniProtKB/TrEMBL
    A0A8M1N4K8, Q58EB0
    Related
    ENSDARP00000101688.2, ENSDART00000113299.4
    Conserved Domains (1) summary
    smart00704
    Location:68106
    ZnF_CDGSH; CDGSH-type zinc finger. Function unknown

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    7902346..7916683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157144.5XP_005157201.1  uncharacterized protein LOC541492 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B412
    Conserved Domains (1) summary
    smart00704
    Location:5896
    ZnF_CDGSH; CDGSH-type zinc finger. Function unknown