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THSD1 thrombospondin type 1 domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 541228, updated on 4-Oct-2024

Summary

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Official Symbol
THSD1provided by VGNC
Official Full Name
thrombospondin type 1 domain containing 1provided by VGNC
Primary source
VGNC:VGNC:35849
See related
BGD:BT30059; Ensembl:ENSBTAG00000020374
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See THSD1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (21651408..21679255)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 2 Neighboring gene vacuolar protein sorting 36 homolog Neighboring gene U8 small nucleolar RNA Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin type-1 domain-containing protein 1
Names
thrombospondin, type I, domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014967.1 → NP_001014967.1  thrombospondin type-1 domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_001014967.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021161
    UniProtKB/Swiss-Prot
    Q5BIR3
    UniProtKB/TrEMBL
    A5D7K2
    Related
    ENSBTAP00000027155.3, ENSBTAT00000027155.5
    Conserved Domains (1) summary
    smart00209
    Location:343 → 392
    TSP1; Thrombospondin type 1 repeats

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    21651408..21679255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005213675.5 → XP_005213732.1  thrombospondin type-1 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M4D5, A5D7K2
    Related
    ENSBTAP00000064667.1, ENSBTAT00000066377.2
    Conserved Domains (1) summary
    PHA03307
    Location:420 → 738
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BIR3.1 GenPept UniProtKB/Swiss-Prot:Q5BIR3

Gene LinkOut

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