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DEK DEK proto-oncogene [ Bos taurus (domestic cattle) ]

Gene ID: 540945, updated on 4-Oct-2024

Summary

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Official Symbol
DEKprovided by VGNC
Official Full Name
DEK proto-oncogeneprovided by VGNC
Primary source
VGNC:VGNC:27992
See related
Ensembl:ENSBTAG00000012865
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See DEK in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (39355713..39387660)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 144B Neighboring gene uncharacterized LOC112443866 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene lysine demethylase 1B Neighboring gene thiopurine S-methyltransferase Neighboring gene NHL repeat containing E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein DEK
Names
DEK oncogene (DNA binding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099717.1 → NP_001093187.1  protein DEK

    See identical proteins and their annotated locations for NP_001093187.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142198
    UniProtKB/TrEMBL
    A0AAA9TCH1, A5PJQ1, F1MCP2
    Related
    ENSBTAP00000017097.5, ENSBTAT00000017097.6
    Conserved Domains (2) summary
    smart00513
    Location:149 → 183
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam08766
    Location:320 → 374
    DEK_C; DEK C terminal domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39355713..39387660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024983697.2 → XP_024839465.1  protein DEK isoform X1

    UniProtKB/TrEMBL
    A0AAA9TCH1, A5PJQ1, F1MCP2
    Conserved Domains (2) summary
    smart00513
    Location:149 → 183
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam08766
    Location:320 → 374
    DEK_C; DEK C terminal domain

  2. XM_059880421.1 → XP_059736404.1  protein DEK isoform X3

  3. XM_010818493.4 → XP_010816795.1  protein DEK isoform X2

    See identical proteins and their annotated locations for XP_010816795.1

    UniProtKB/TrEMBL
    A0AAA9SKP0
    Related
    ENSBTAP00000086910.1, ENSBTAT00000132619.1
    Conserved Domains (1) summary
    smart00513
    Location:149 → 183
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

  4. XM_010818492.4 → XP_010816794.1  protein DEK isoform X1

    See identical proteins and their annotated locations for XP_010816794.1

    UniProtKB/TrEMBL
    A0AAA9TCH1, A5PJQ1, F1MCP2
    Conserved Domains (2) summary
    smart00513
    Location:149 → 183
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam08766
    Location:320 → 374
    DEK_C; DEK C terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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