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ELOVL1 ELOVL fatty acid elongase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 540348, updated on 10-Oct-2024

Summary

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Official Symbol
ELOVL1provided by VGNC
Official Full Name
ELOVL fatty acid elongase 1provided by VGNC
Primary source
VGNC:VGNC:28447
See related
BGD:BT10782; Ensembl:ENSBTAG00000055871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ELOVL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (102629353..102654978)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type F Neighboring gene SZT2 subunit of KICSTOR complex Neighboring gene hydroxypyruvate isomerase (putative) Neighboring gene transmembrane protein 258 Neighboring gene U6 spliceosomal RNA Neighboring gene cell division cycle 20 Neighboring gene MPL proto-oncogene, thrombopoietin receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC127241

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation, monounsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, polyunsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, saturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of core mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very long chain fatty acid elongase 1; elongation of very long chain fatty acids protein 1
Names
elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
elongation of very long chain fatty acids-like 1
NP_001029875.1
XP_010801987.1
XP_059740785.1
XP_059740786.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034703.2 → NP_001029875.1  very long chain fatty acid elongase 1

    See identical proteins and their annotated locations for NP_001029875.1

    Status: PROVISIONAL

    Source sequence(s)
    BC102158
    UniProtKB/TrEMBL
    A0A3Q1MIU0, Q3T120
    Related
    ENSBTAP00000012940.6, ENSBTAT00000012940.7
    Conserved Domains (1) summary
    pfam01151
    Location:23 → 260
    ELO; GNS1/SUR4 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    102629353..102654978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010803685.4 → XP_010801987.1  elongation of very long chain fatty acids protein 1 isoform X1

    Conserved Domains (2) summary
    pfam01151
    Location:331 → 568
    ELO; GNS1/SUR4 family
    pfam10232
    Location:1 → 265
    Med8; Mediator of RNA polymerase II transcription complex subunit 8

  2. XM_059884803.1 → XP_059740786.1  elongation of very long chain fatty acids protein 1 isoform X2

    UniProtKB/TrEMBL
    Q3T120
    Related
    ENSBTAP00000072145.2, ENSBTAT00000086981.2

  3. XM_059884802.1 → XP_059740785.1  elongation of very long chain fatty acids protein 1 isoform X2

    UniProtKB/TrEMBL
    Q3T120
    Related
    ENSBTAP00000070656.2, ENSBTAT00000071105.2
Nucleotide Protein Strain
Heading Accession and Version

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