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RBM42 RNA binding motif protein 42 [ Bos taurus (domestic cattle) ]

Gene ID: 540172, updated on 10-Oct-2024

Summary

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Official Symbol
RBM42provided by VGNC
Official Full Name
RNA binding motif protein 42provided by VGNC
Primary source
VGNC:VGNC:33801
See related
BGD:BT12557; Ensembl:ENSBTAG00000013440
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RBM42 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (46355969..46363445)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene probable hydrolase PNKD pseudogene Neighboring gene HAUS augmin like complex subunit 5 Neighboring gene ETS variant transcription factor 2 Neighboring gene cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139843

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076205.1 → NP_001069673.1  RNA-binding protein 42

    See identical proteins and their annotated locations for NP_001069673.1

    Status: PROVISIONAL

    Source sequence(s)
    BC119904
    UniProtKB/Swiss-Prot
    Q0P5L0
    UniProtKB/TrEMBL
    A0AAA9SPM3
    Related
    ENSBTAP00000017884.4, ENSBTAT00000017884.5
    Conserved Domains (2) summary
    COG0724
    Location:347 → 425
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12383
    Location:343 → 425
    RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    46355969..46363445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005219000.5 → XP_005219057.1  RNA-binding protein 42 isoform X1

    See identical proteins and their annotated locations for XP_005219057.1

    UniProtKB/TrEMBL
    A0A3Q1M222, A0AAA9SPM3
    Related
    ENSBTAP00000063810.1, ENSBTAT00000086550.2
    Conserved Domains (1) summary
    cd12383
    Location:372 → 454
    RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins

  2. XM_005219001.5 → XP_005219058.1  RNA-binding protein 42 isoform X2

    See identical proteins and their annotated locations for XP_005219058.1

    UniProtKB/TrEMBL
    A0AAA9SPM3
    Conserved Domains (2) summary
    cd12383
    Location:365 → 447
    RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins
    cl26386
    Location:2 → 181
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  3. XM_059876877.1 → XP_059732860.1  RNA-binding protein 42 isoform X3

    UniProtKB/TrEMBL
    A0AAA9SNL9
    Related
    ENSBTAP00000085553.1, ENSBTAT00000135662.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0P5L0.1 GenPept UniProtKB/Swiss-Prot:Q0P5L0

Gene LinkOut

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