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BTBD11 BTB domain containing 11 [ Bos taurus (domestic cattle) ]

Gene ID: 539986, updated on 4-Oct-2024

Summary

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Official Symbol
BTBD11provided by VGNC
Official Full Name
BTB domain containing 11provided by VGNC
Primary source
VGNC:VGNC:26585
See related
BGD:BT29526; Ensembl:ENSBTAG00000027064
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See BTBD11 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (70577663..70909798)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345315 Neighboring gene uncharacterized LOC112446722 Neighboring gene voltage-dependent anion-selective channel protein 2-like pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene PWP1 homolog, endonuclein Neighboring gene PR/SET domain 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and BTB/POZ domain-containing protein BTBD11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205745.1 → NP_001192674.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000005
    UniProtKB/TrEMBL
    E1BJI4
    Related
    ENSBTAP00000053857.2, ENSBTAT00000061102.4
    Conserved Domains (4) summary
    cd00204
    Location:602 → 755
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:610 → 651
    ANK; ANK repeat [structural motif]
    pfam00651
    Location:919 → 1026
    BTB; BTB/POZ domain
    cl25693
    Location:192 → 248
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    70577663..70909798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024992023.2 → XP_024847791.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SY23
    Related
    ENSBTAP00000088217.1, ENSBTAT00000109813.1
    Conserved Domains (5) summary
    cd00204
    Location:602 → 755
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:610 → 651
    ANK; ANK repeat [structural motif]
    pfam00651
    Location:919 → 1003
    BTB; BTB/POZ domain
    cl06652
    Location:1003 → 1047
    BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains
    cl25693
    Location:192 → 248
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

  2. XM_059886625.1 → XP_059742608.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SAS2
    Related
    ENSBTAP00000081006.1, ENSBTAT00000103652.1

  3. XM_024992025.2 → XP_024847793.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X3

    Conserved Domains (4) summary
    sd00045
    Location:134 → 175
    ANK; ANK repeat [structural motif]
    cd18351
    Location:427 → 557
    BTB_POZ_BTBD11; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 11 (BTBD11)
    cd18527
    Location:550 → 632
    BACK_BTBD11; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 11 (BTBD11)
    pfam12796
    Location:136 → 242
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_059886626.1 → XP_059742609.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X3

  5. XM_024992027.2 → XP_024847795.1  ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X3

    Conserved Domains (4) summary
    sd00045
    Location:134 → 175
    ANK; ANK repeat [structural motif]
    cd18351
    Location:427 → 557
    BTB_POZ_BTBD11; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 11 (BTBD11)
    cd18527
    Location:550 → 632
    BACK_BTBD11; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 11 (BTBD11)
    pfam12796
    Location:136 → 242
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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