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FOXJ3 forkhead box J3 [ Bos taurus (domestic cattle) ]

Gene ID: 539458, updated on 10-Aug-2024

Summary

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Official Symbol
FOXJ3provided by VGNC
Official Full Name
forkhead box J3provided by VGNC
Primary source
VGNC:VGNC:29091
See related
BGD:BT14628; Ensembl:ENSBTAG00000015887
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See FOXJ3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (103880144..104005463)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101907688 Neighboring gene ribosomal modification protein rimK like family member A Neighboring gene guanylate cyclase activator 2A Neighboring gene guanylate cyclase activator 2B Neighboring gene HIVEP zinc finger 3 Neighboring gene uncharacterized LOC107132340

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein J3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    103880144..104005463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005204917.4 → XP_005204974.1  forkhead box protein J3 isoform X1

    See identical proteins and their annotated locations for XP_005204974.1

    UniProtKB/TrEMBL
    E1BK17
    Conserved Domains (2) summary
    pfam00250
    Location:78 → 155
    Forkhead; Forkhead domain
    pfam04592
    Location:358 → 427
    SelP_N; Selenoprotein P, N terminal region

  2. XM_059885181.1 → XP_059741164.1  forkhead box protein J3 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SNQ3, E1BK17

  3. XM_059885180.1 → XP_059741163.1  forkhead box protein J3 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SNQ3, E1BK17
    Related
    ENSBTAP00000086987.1, ENSBTAT00000124894.1

  4. XM_005204916.4 → XP_005204973.1  forkhead box protein J3 isoform X1

    See identical proteins and their annotated locations for XP_005204973.1

    UniProtKB/TrEMBL
    E1BK17
    Related
    ENSBTAP00000053827.4, ENSBTAT00000060940.4
    Conserved Domains (2) summary
    pfam00250
    Location:78 → 155
    Forkhead; Forkhead domain
    pfam04592
    Location:358 → 427
    SelP_N; Selenoprotein P, N terminal region

  5. XM_015466937.3 → XP_015322423.1  forkhead box protein J3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LJR0, E1BK17
    Related
    ENSBTAP00000056698.1, ENSBTAT00000084389.2
    Conserved Domains (2) summary
    pfam00250
    Location:78 → 155
    Forkhead; Forkhead domain
    pfam04592
    Location:324 → 393
    SelP_N; Selenoprotein P, N terminal region

  6. XM_015466938.3 → XP_015322424.1  forkhead box protein J3 isoform X1

    UniProtKB/TrEMBL
    E1BK17
    Conserved Domains (2) summary
    pfam00250
    Location:78 → 155
    Forkhead; Forkhead domain
    pfam04592
    Location:358 → 427
    SelP_N; Selenoprotein P, N terminal region

  7. XM_059885182.1 → XP_059741165.1  forkhead box protein J3 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SNQ3, E1BK17

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001076162.1: Suppressed sequence

    Description
    NM_001076162.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: FOXJ3 (GeneID:22887).
Nucleotide Protein Strain
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