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LMAN2L lectin, mannose binding 2 like [ Bos taurus (domestic cattle) ]

Gene ID: 539289, updated on 10-Oct-2024

Summary

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Official Symbol
LMAN2Lprovided by VGNC
Official Full Name
lectin, mannose binding 2 likeprovided by VGNC
Primary source
VGNC:VGNC:30921
See related
BGD:BT12127; Ensembl:ENSBTAG00000003975
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LMAN2L in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (2685158..2704099, complement)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene U6 spliceosomal RNA Neighboring gene fer-1 like family member 5 Neighboring gene uncharacterized LOC112448735 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC129002

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein
Names
LMAN2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014953.1 → NP_001014953.1  VIP36-like protein precursor

    See identical proteins and their annotated locations for NP_001014953.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021149
    UniProtKB/TrEMBL
    A0AAF6YLK6
    Related
    ENSBTAP00000005195.5, ENSBTAT00000005195.6
    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    2685158..2704099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005212348.5 → XP_005212405.2  VIP36-like protein isoform X1

    See identical proteins and their annotated locations for XP_005212405.2

    UniProtKB/Swiss-Prot
    Q2HJD1, Q5BIS5
    UniProtKB/TrEMBL
    A0AAF6ZHL5
    Related
    ENSBTAP00000046571.3, ENSBTAT00000049716.4
    Conserved Domains (1) summary
    cl14058
    Location:50 → 298
    lectin_L-type; legume lectins

  2. XM_059891410.1 → XP_059747393.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0AAA9TY45
    Related
    ENSBTAP00000103282.1, ENSBTAT00000092822.1

  3. XM_059891411.1 → XP_059747394.1  VIP36-like protein isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2HJD1.1 GenPept UniProtKB/Swiss-Prot:Q2HJD1

Gene LinkOut

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