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ATOH1 atonal bHLH transcription factor 1 [ Bos taurus (domestic cattle) ]

Gene ID: 539158, updated on 4-Oct-2024

Summary

Official Symbol
ATOH1provided by VGNC
Official Full Name
atonal bHLH transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:26270
See related
BGD:BT20997; Ensembl:ENSBTAG00000002895
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See ATOH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (30714628..30716815, complement)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Neighboring gene small ribosomal subunit protein uS9m-like Neighboring gene uncharacterized LOC112447051 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene glutamate ionotropic receptor delta type subunit 2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

General protein information

Preferred Names
transcription factor ATOH1
Names
atonal homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098099.1NP_001091568.1  transcription factor ATOH1

    See identical proteins and their annotated locations for NP_001091568.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134506
    UniProtKB/TrEMBL
    A4IFC1
    Related
    ENSBTAP00000003762.3, ENSBTAT00000003762.4
    Conserved Domains (1) summary
    cd00083
    Location:156214
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    30714628..30716815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)