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KLF9 KLF transcription factor 9 [ Bos taurus (domestic cattle) ]

Gene ID: 539139, updated on 4-Oct-2024

Summary

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Official Symbol
KLF9provided by VGNC
Official Full Name
KLF transcription factor 9provided by VGNC
Primary source
VGNC:VGNC:30632
See related
BGD:BT19203; Ensembl:ENSBTAG00000016229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See KLF9 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (46512457..46611498, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 95 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene MAM domain containing 2 Neighboring gene structural maintenance of chromosomes 5 Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene microRNA mir-2285i Neighboring gene uncharacterized LOC132345957

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 9
Names
Kruppel like factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193214.1 → NP_001180143.1  Krueppel-like factor 9

    See identical proteins and their annotated locations for NP_001180143.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000008
    UniProtKB/TrEMBL
    E1B7V1
    Related
    ENSBTAP00000021593.3, ENSBTAT00000021593.5
    Conserved Domains (3) summary
    COG5048
    Location:94 → 234
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:145 → 167
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd21578
    Location:3 → 144
    KLF9_N; N-terminal domain of Kruppel-like factor 9

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    46512457..46611498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059889181.1 → XP_059745164.1  Krueppel-like factor 9 isoform X1

    UniProtKB/TrEMBL
    E1B7V1

  2. XM_059889180.1 → XP_059745163.1  Krueppel-like factor 9 isoform X1

    UniProtKB/TrEMBL
    E1B7V1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials