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ODF2 outer dense fiber of sperm tails 2 [ Bos taurus (domestic cattle) ]

Gene ID: 539043, updated on 10-Oct-2024

Summary

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Official Symbol
ODF2provided by VGNC
Official Full Name
outer dense fiber of sperm tails 2provided by VGNC
Primary source
VGNC:VGNC:32401
See related
BGD:BT28494; Ensembl:ENSBTAG00000030567
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ODF2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (99034278..99064283)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene small nucleolar RNA SNORA70 Neighboring gene cerebral endothelial cell adhesion molecule Neighboring gene GLE1 RNA export mediator Neighboring gene spectrin alpha, non-erythrocytic 1 Neighboring gene dynein 2 intermediate chain 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC134075

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
outer dense fiber protein 2
Names
cenexin
outer dense fiber of sperm tails protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038180.2 → NP_001033269.1  outer dense fiber protein 2

    See identical proteins and their annotated locations for NP_001033269.1

    Status: PROVISIONAL

    Source sequence(s)
    BC111268
    UniProtKB/Swiss-Prot
    Q2T9U2
    UniProtKB/TrEMBL
    A0A3Q1LHX7
    Related
    ENSBTAP00000057867.2, ENSBTAT00000083421.2
    Conserved Domains (2) summary
    COG1196
    Location:228 → 566
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG3170
    Location:570 → 653
    FimV; Tfp pilus assembly protein FimV [Cell motility, Extracellular structures]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    99034278..99064283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059891399.1 → XP_059747382.1  outer dense fiber protein 2 isoform X14

  2. XM_059891395.1 → XP_059747378.1  outer dense fiber protein 2 isoform X9

  3. XM_059891403.1 → XP_059747386.1  outer dense fiber protein 2 isoform X19

  4. XM_059891391.1 → XP_059747374.1  outer dense fiber protein 2 isoform X2

  5. XM_005213309.4 → XP_005213366.2  outer dense fiber protein 2 isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:202 → 886
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_010810441.3 → XP_010808743.2  outer dense fiber protein 2 isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:202 → 879
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_005213310.5 → XP_005213367.2  outer dense fiber protein 2 isoform X4

    Conserved Domains (1) summary
    cl25732
    Location:183 → 867
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_015473649.3 → XP_015329135.2  outer dense fiber protein 2 isoform X5

    Conserved Domains (1) summary
    cl25732
    Location:152 → 840
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_005213311.4 → XP_005213368.2  outer dense fiber protein 2 isoform X6

    UniProtKB/TrEMBL
    F1MU43
    Related
    ENSBTAP00000020325.6, ENSBTAT00000020325.7
    Conserved Domains (1) summary
    cl25732
    Location:163 → 847
    SMC_N; RecF/RecN/SMC N terminal domain

  10. XM_010810442.3 → XP_010808744.2  outer dense fiber protein 2 isoform X10

    Conserved Domains (1) summary
    cl25732
    Location:132 → 820
    SMC_N; RecF/RecN/SMC N terminal domain

  11. XM_010810443.4 → XP_010808745.2  outer dense fiber protein 2 isoform X11

    Conserved Domains (1) summary
    cl25732
    Location:144 → 828
    SMC_N; RecF/RecN/SMC N terminal domain

  12. XM_024998992.2 → XP_024854760.1  outer dense fiber protein 2 isoform X12

    UniProtKB/TrEMBL
    A0A3Q1M355
    Related
    ENSBTAP00000067905.2, ENSBTAT00000068517.2
    Conserved Domains (1) summary
    cl25732
    Location:121 → 805
    SMC_N; RecF/RecN/SMC N terminal domain

  13. XM_005213316.5 → XP_005213373.2  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61
    Related
    ENSBTAP00000071683.2, ENSBTAT00000078075.2
    Conserved Domains (1) summary
    cl25732
    Location:158 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  14. XM_005213317.5 → XP_005213374.2  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61
    Conserved Domains (1) summary
    cl25732
    Location:158 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  15. XM_059891394.1 → XP_059747377.1  outer dense fiber protein 2 isoform X8

  16. XM_059891404.1 → XP_059747387.1  outer dense fiber protein 2 isoform X20

    Related
    ENSBTAP00000058469.2, ENSBTAT00000079857.2

  17. XM_005213312.4 → XP_005213369.2  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61
    Conserved Domains (1) summary
    cl25732
    Location:158 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  18. XM_024998990.2 → XP_024854758.1  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61
    Conserved Domains (1) summary
    cl25732
    Location:158 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  19. XM_059891393.1 → XP_059747376.1  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61

  20. XM_059891397.1 → XP_059747380.1  outer dense fiber protein 2 isoform X13

  21. XM_005213330.4 → XP_005213387.2  outer dense fiber protein 2 isoform X16

    Conserved Domains (1) summary
    cl25732
    Location:69 → 757
    SMC_N; RecF/RecN/SMC N terminal domain

  22. XM_015473651.3 → XP_015329137.3  outer dense fiber protein 2 isoform X15

  23. XM_024998991.2 → XP_024854759.1  outer dense fiber protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1MC61
    Conserved Domains (1) summary
    cl25732
    Location:158 → 842
    SMC_N; RecF/RecN/SMC N terminal domain

  24. XM_059891398.1 → XP_059747381.1  outer dense fiber protein 2 isoform X9

  25. XM_059891400.1 → XP_059747383.1  outer dense fiber protein 2 isoform X17

  26. XM_059891401.1 → XP_059747384.1  outer dense fiber protein 2 isoform X9

  27. XM_059891402.1 → XP_059747385.1  outer dense fiber protein 2 isoform X18

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2T9U2.1 GenPept UniProtKB/Swiss-Prot:Q2T9U2

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