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CALCOCO1 calcium binding and coiled-coil domain 1 [ Bos taurus (domestic cattle) ]

Gene ID: 538675, updated on 18-Aug-2024

Summary

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Official Symbol
CALCOCO1provided by VGNC
Official Full Name
calcium binding and coiled-coil domain 1provided by VGNC
Primary source
VGNC:VGNC:26702
See related
BGD:BT20867; Ensembl:ENSBTAG00000015016
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See CALCOCO1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (26328413..26342525)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene sorting nexin-6-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112446668 Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene ATP synthase membrane subunit c locus 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC128949

General protein information

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Preferred Names
calcium-binding and coiled-coil domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046435.1 → NP_001039900.1  calcium-binding and coiled-coil domain-containing protein 1

    See identical proteins and their annotated locations for NP_001039900.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105562
    UniProtKB/Swiss-Prot
    Q2KJ21
    UniProtKB/TrEMBL
    F1N037
    Conserved Domains (4) summary
    pfam07888
    Location:13 → 597
    CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    cd16269
    Location:351 → 361
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:276 → 380
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl23720
    Location:420 → 510
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26328413..26342525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010804858.4 → XP_010803160.1  calcium-binding and coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SI38, F1N037
    Related
    ENSBTAP00000082206.1, ENSBTAT00000095957.1
    Conserved Domains (4) summary
    pfam07888
    Location:13 → 597
    CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    cd16269
    Location:351 → 361
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:276 → 380
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl23720
    Location:420 → 510
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_005206162.5 → XP_005206219.1  calcium-binding and coiled-coil domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SJH9, F1N037
    Related
    ENSBTAP00000082755.1, ENSBTAT00000101469.1
    Conserved Domains (4) summary
    pfam07888
    Location:13 → 597
    CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    cd16269
    Location:351 → 361
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:276 → 380
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl23720
    Location:420 → 510
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2KJ21.1 GenPept UniProtKB/Swiss-Prot:Q2KJ21

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