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LRRTM1 leucine rich repeat transmembrane neuronal 1 [ Bos taurus (domestic cattle) ]

Gene ID: 538452, updated on 4-Oct-2024

Summary

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Official Symbol
LRRTM1provided by VGNC
Official Full Name
leucine rich repeat transmembrane neuronal 1provided by VGNC
Primary source
VGNC:VGNC:102826
See related
BGD:BT25380; Ensembl:ENSBTAG00000054157
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LRRTM1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (55211054..55214346)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene catenin alpha 2 Neighboring gene uncharacterized LOC132346497 Neighboring gene small nucleolar RNA SNORA72 Neighboring gene uncharacterized LOC112448799 Neighboring gene uncharacterized LOC107132934

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139690

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat transmembrane neuronal protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080304.1 → NP_001073773.1  leucine-rich repeat transmembrane neuronal protein 1 precursor

    See identical proteins and their annotated locations for NP_001073773.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126503
    UniProtKB/Swiss-Prot
    A1A4H9
    Conserved Domains (3) summary
    COG4886
    Location:75 → 315
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:306 → 318
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:91 → 114
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    55211054..55214346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024998925.2 → XP_024854693.1  leucine-rich repeat transmembrane neuronal protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A1A4H9
    Related
    ENSBTAP00000062642.1, ENSBTAT00000082408.2
    Conserved Domains (3) summary
    COG4886
    Location:75 → 315
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:306 → 318
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:91 → 114
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_024998926.2 → XP_024854694.1  leucine-rich repeat transmembrane neuronal protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A1A4H9
    Related
    ENSBTAP00000075679.1, ENSBTAT00000105250.1
    Conserved Domains (3) summary
    COG4886
    Location:75 → 315
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:306 → 318
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:91 → 114
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1A4H9.1 GenPept UniProtKB/Swiss-Prot:A1A4H9

Gene LinkOut

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