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DZIP3 DAZ interacting zinc finger protein 3 [ Bos taurus (domestic cattle) ]

Gene ID: 537349, updated on 10-Oct-2024

Summary

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Official Symbol
DZIP3provided by VGNC
Official Full Name
DAZ interacting zinc finger protein 3provided by VGNC
Primary source
VGNC:VGNC:28285
See related
BGD:BT19057; Ensembl:ENSBTAG00000006158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See DZIP3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (53338842..53468674)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 15 Neighboring gene kinesin-like protein KIFC1 Neighboring gene cellular inhibitor of PP2A Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC132345555

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC137859

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase DZIP3
Names
DAZ interacting protein 3, zinc finger
XP_005201394.1
XP_015326644.1
XP_024846434.1
XP_059741547.1
XP_059741549.1
XP_059741552.1
XP_059741557.1
XP_059741562.1
XP_059741568.1
XP_059741575.1
XP_059741580.1
XP_059741584.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076092.2 → NP_001069560.2  E3 ubiquitin-protein ligase DZIP3

    Status: VALIDATED

    Source sequence(s)
    NKLS02000001
    UniProtKB/TrEMBL
    A0AAA9TGU2

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    53338842..53468674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059885574.1 → XP_059741557.1  E3 ubiquitin-protein ligase DZIP3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1B2

  2. XM_059885566.1 → XP_059741549.1  E3 ubiquitin-protein ligase DZIP3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1B2
    Related
    ENSBTAP00000077104.1, ENSBTAT00000129215.1

  3. XM_015471158.3 → XP_015326644.1  E3 ubiquitin-protein ligase DZIP3 isoform X7

    Related
    ENSBTAP00000097421.1, ENSBTAT00000103048.1
    Conserved Domains (2) summary
    pfam12678
    Location:954 → 1000
    zf-rbx1; RING-H2 zinc finger
    pfam13639
    Location:960 → 1000
    zf-RING_2; Ring finger domain

  4. XM_059885564.1 → XP_059741547.1  E3 ubiquitin-protein ligase DZIP3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1B2

  5. XM_059885585.1 → XP_059741568.1  E3 ubiquitin-protein ligase DZIP3 isoform X4

    UniProtKB/TrEMBL
    A0AAA9T962
    Related
    ENSBTAP00000092438.1, ENSBTAT00000114938.1

  6. XM_059885597.1 → XP_059741580.1  E3 ubiquitin-protein ligase DZIP3 isoform X6

  7. XM_059885601.1 → XP_059741584.1  E3 ubiquitin-protein ligase DZIP3 isoform X7

    UniProtKB/TrEMBL
    A0AAA9TGU2
    Related
    ENSBTAP00000008099.7, ENSBTAT00000008099.7

  8. XM_005201337.5 → XP_005201394.1  E3 ubiquitin-protein ligase DZIP3 isoform X2

    See identical proteins and their annotated locations for XP_005201394.1

    UniProtKB/TrEMBL
    A0AAA9SYY6, A0AAA9TJM3
    Related
    ENSBTAP00000088588.1, ENSBTAT00000104889.1
    Conserved Domains (2) summary
    cd16460
    Location:1143 → 1185
    RING-H2_DZIP3; RING finger, H2 subclass, found in DAZ (deleted in azoospermia)-interacting protein 3 (DZIP3) and similar proteins
    cl25732
    Location:754 → 938
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_024990666.2 → XP_024846434.1  E3 ubiquitin-protein ligase DZIP3 isoform X8

    UniProtKB/TrEMBL
    A0AAA9THB7, Q17R11
    Related
    ENSBTAP00000097909.1, ENSBTAT00000125186.1
    Conserved Domains (1) summary
    cd16460
    Location:937 → 979
    RING-H2_DZIP3; RING finger, H2 subclass, found in DAZ (deleted in azoospermia)-interacting protein 3 (DZIP3) and similar proteins

  10. XM_059885579.1 → XP_059741562.1  E3 ubiquitin-protein ligase DZIP3 isoform X3

  11. XM_059885592.1 → XP_059741575.1  E3 ubiquitin-protein ligase DZIP3 isoform X5

  12. XM_059885569.1 → XP_059741552.1  E3 ubiquitin-protein ligase DZIP3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1B2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials