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CPEB3 cytoplasmic polyadenylation element binding protein 3 [ Bos taurus (domestic cattle) ]

Gene ID: 537016, updated on 10-Oct-2024

Summary

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Official Symbol
CPEB3provided by VGNC
Official Full Name
cytoplasmic polyadenylation element binding protein 3provided by VGNC
Primary source
VGNC:VGNC:27649
See related
Ensembl:ENSBTAG00000015450
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See CPEB3 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (13515355..13778677, complement)

Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene tankyrase 2 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene B-TFIID TATA-box binding protein associated factor 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene uncharacterized LOC132343928

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells. Wang Y, et al. Anim Sci J, 2020 Jan-Dec. PMID 32648330
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells.
    Title: CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193228.2 → NP_001180157.2  cytoplasmic polyadenylation element-binding protein 3

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000026
    UniProtKB/TrEMBL
    A0A3Q1LL99, A0AAA9SVW4
    Related
    ENSBTAP00000090627.1, ENSBTAT00000099493.1
    Conserved Domains (3) summary
    cd12724
    Location:440 → 531
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:548 → 628
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:623 → 684
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    13515355..13778677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881919.1 → XP_059737902.1  cytoplasmic polyadenylation element-binding protein 3 isoform X6

  2. XM_024985731.2 → XP_024841499.1  cytoplasmic polyadenylation element-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1LL99
    Conserved Domains (3) summary
    cd12724
    Location:457 → 548
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:565 → 645
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:640 → 701
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  3. XM_024985732.2 → XP_024841500.1  cytoplasmic polyadenylation element-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1LL99, E1BGL3
    Related
    ENSBTAP00000013178.7, ENSBTAT00000013178.7
    Conserved Domains (3) summary
    cd12724
    Location:426 → 517
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:534 → 614
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:609 → 670
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  4. XM_005225419.5 → XP_005225476.2  cytoplasmic polyadenylation element-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1LL99
    Conserved Domains (3) summary
    cd12724
    Location:457 → 548
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:565 → 645
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:640 → 701
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  5. XM_005225420.5 → XP_005225477.2  cytoplasmic polyadenylation element-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1LL99
    Conserved Domains (3) summary
    cd12724
    Location:457 → 548
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:565 → 645
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:640 → 701
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  6. XM_010819779.4 → XP_010818081.2  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MDU5, A0AAA9T4F8
    Related
    ENSBTAP00000092691.1, ENSBTAT00000091861.1
    Conserved Domains (3) summary
    cd12724
    Location:476 → 567
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:584 → 664
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:659 → 720
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  7. XM_010819778.4 → XP_010818080.2  cytoplasmic polyadenylation element-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MDU5
    Conserved Domains (3) summary
    cd12724
    Location:484 → 575
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:592 → 672
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:667 → 728
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  8. XM_010819777.4 → XP_010818079.2  cytoplasmic polyadenylation element-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MDU5
    Conserved Domains (3) summary
    cd12724
    Location:499 → 590
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:607 → 687
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:682 → 743
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  9. XM_015460600.3 → XP_015316086.2  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MDU5
    Conserved Domains (3) summary
    cd12724
    Location:507 → 598
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:615 → 695
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:690 → 751
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
Nucleotide Protein Strain
Heading Accession and Version

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