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YARS2 tyrosyl-tRNA synthetase 2 [ Bos taurus (domestic cattle) ]

Gene ID: 536956, updated on 4-Oct-2024

Summary

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Official Symbol
YARS2provided by VGNC
Official Full Name
tyrosyl-tRNA synthetase 2provided by VGNC
Primary source
VGNC:VGNC:37016
See related
BGD:BT13752; Ensembl:ENSBTAG00000011399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See YARS2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (77131742..77158405)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene protein SET-like Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene dynamin 1 like Neighboring gene ADP-ribosylation factor 1-like Neighboring gene FYVE, RhoGEF and PH domain containing 4 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tyrosine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tyrosyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine--tRNA ligase, mitochondrial
Names
tyrosyl-tRNA synthetase 2, mitochondrial
tyrosyl-tRNA synthetase, mitochondrial
NP_001091557.1
XP_005206899.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098088.2 → NP_001091557.1  tyrosine--tRNA ligase, mitochondrial

    See identical proteins and their annotated locations for NP_001091557.1

    Status: PROVISIONAL

    Source sequence(s)
    BC140541
    UniProtKB/TrEMBL
    A5D7G0, F6RX18
    Conserved Domains (2) summary
    cd00805
    Location:75 → 357
    TyrRS_core; catalytic core domain of tyrosinyl-tRNA synthetase
    PRK05912
    Location:38 → 475
    PRK05912; tyrosyl-tRNA synthetase; Validated

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    77131742..77158405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206842.5 → XP_005206899.1  tyrosine--tRNA ligase, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_005206899.1

    UniProtKB/TrEMBL
    A5D7G0, F6RX18
    Related
    ENSBTAP00000101278.1, ENSBTAT00000117383.1
    Conserved Domains (2) summary
    cd00805
    Location:75 → 357
    TyrRS_core; catalytic core domain of tyrosinyl-tRNA synthetase
    PRK05912
    Location:38 → 475
    PRK05912; tyrosyl-tRNA synthetase; Validated

RNA

  1. XR_009494415.1 RNA Sequence

  2. XR_003034594.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials