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ZFYVE16 zinc finger FYVE-type containing 16 [ Bos taurus (domestic cattle) ]

Gene ID: 536671, updated on 4-Oct-2024

Summary

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Official Symbol
ZFYVE16provided by VGNC
Official Full Name
zinc finger FYVE-type containing 16provided by VGNC
Primary source
VGNC:VGNC:37174
See related
BGD:BT25601; Ensembl:ENSBTAG00000021577
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ZFYVE16 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (80568767..80620456)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL20-like Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene fibrillarin like 1 Neighboring gene family with sequence similarity 151 member B Neighboring gene ankyrin repeat domain 34B Neighboring gene uncharacterized LOC112447482

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger FYVE domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206200.2 → NP_001193129.2  zinc finger FYVE domain-containing protein 16

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000007
    UniProtKB/TrEMBL
    E1BEG4
    Related
    ENSBTAP00000028751.5, ENSBTAT00000028751.5
    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1172 → 1520
    DUF3480; Domain of unknown function (DUF3480)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    80568767..80620456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015472353.3 → XP_015327839.2  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4
    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1172 → 1520
    DUF3480; Domain of unknown function (DUF3480)

  2. XM_059888292.1 → XP_059744275.1  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4

  3. XM_005209707.5 → XP_005209764.2  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4
    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1172 → 1520
    DUF3480; Domain of unknown function (DUF3480)

  4. XM_005209708.5 → XP_005209765.2  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4
    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1172 → 1520
    DUF3480; Domain of unknown function (DUF3480)

  5. XM_015472354.3 → XP_015327840.2  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4
    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1172 → 1520
    DUF3480; Domain of unknown function (DUF3480)

  6. XM_024994403.2 → XP_024850171.1  zinc finger FYVE domain-containing protein 16 isoform X2

    Conserved Domains (2) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:1118 → 1466
    DUF3480; Domain of unknown function (DUF3480)

  7. XM_024994404.2 → XP_024850172.1  zinc finger FYVE domain-containing protein 16 isoform X3

    Conserved Domains (1) summary
    cd15729
    Location:745 → 811
    FYVE_endofin; FYVE domain found in endofin and similar proteins

  8. XM_059888291.1 → XP_059744274.1  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4

  9. XM_059888293.1 → XP_059744276.1  zinc finger FYVE domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    E1BEG4

  10. XM_059888294.1 → XP_059744277.1  zinc finger FYVE domain-containing protein 16 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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