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PHTF1 putative homeodomain transcription factor 1 [ Bos taurus (domestic cattle) ]

Gene ID: 536504, updated on 10-Oct-2024

Summary

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Official Symbol
PHTF1provided by VGNC
Official Full Name
putative homeodomain transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:32848
See related
BGD:BT22935; Ensembl:ENSBTAG00000019615
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See PHTF1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (29624471..29707640)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 22 Neighboring gene uncharacterized LOC112445972 Neighboring gene uncharacterized LOC132344856 Neighboring gene pleckstrin-2-like Neighboring gene round spermatid basic protein 1 Neighboring gene uncharacterized LOC132344857 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 3 Neighboring gene uncharacterized LOC101908104 Neighboring gene 60S ribosomal protein L12 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC142924

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHTF1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076077.1 → NP_001069545.1  protein PHTF1

    See identical proteins and their annotated locations for NP_001069545.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123860
    UniProtKB/Swiss-Prot
    Q08DA4
    UniProtKB/TrEMBL
    A0A3Q1M3T0
    Related
    ENSBTAP00000026132.5, ENSBTAT00000026132.6
    Conserved Domains (1) summary
    pfam12129
    Location:6 → 149
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    29624471..29707640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059884739.1 → XP_059740722.1  protein PHTF1 isoform X1

  2. XM_059884738.1 → XP_059740721.1  protein PHTF1 isoform X1

  3. XM_059884740.1 → XP_059740723.1  protein PHTF1 isoform X1

  4. XM_059884741.1 → XP_059740724.1  protein PHTF1 isoform X1

  5. XM_059884746.1 → XP_059740729.1  protein PHTF1 isoform X4

  6. XM_059884745.1 → XP_059740728.1  protein PHTF1 isoform X2

  7. XM_059884742.1 → XP_059740725.1  protein PHTF1 isoform X1

  8. XM_059884743.1 → XP_059740726.1  protein PHTF1 isoform X1

  9. XM_059884747.1 → XP_059740730.1  protein PHTF1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1N534
    Related
    ENSBTAP00000065114.1, ENSBTAT00000079095.2

  10. XM_024989554.2 → XP_024845322.1  protein PHTF1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M3T0, A0A3Q1MC62
    Related
    ENSBTAP00000067902.1, ENSBTAT00000084866.2
    Conserved Domains (1) summary
    pfam12129
    Location:6 → 149
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08DA4.1 GenPept UniProtKB/Swiss-Prot:Q08DA4

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