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XPOT exportin for tRNA [ Bos taurus (domestic cattle) ]

Gene ID: 535264, updated on 10-Oct-2024

Summary

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Official Symbol
XPOTprovided by VGNC
Official Full Name
exportin for tRNAprovided by VGNC
Primary source
VGNC:VGNC:37002
See related
BGD:BT13929; Ensembl:ENSBTAG00000026962
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See XPOT in Genome Data Viewer
Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (49320231..49488743, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 3 Neighboring gene microRNA mir-2285f-1 Neighboring gene TANK binding kinase 1 Neighboring gene chromosome 5 C12orf56 homolog Neighboring gene transfer RNA phenylalanine (anticodon AAA) Neighboring gene KICSTOR subunit 2 Neighboring gene SLIT-ROBO Rho GTPase activating protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-T
Names
exportin, tRNA (nuclear export receptor for tRNAs)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206076.1 → NP_001193005.1  exportin-T

    See identical proteins and their annotated locations for NP_001193005.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000005
    UniProtKB/TrEMBL
    E1B8Q8
    Related
    ENSBTAP00000038398.6, ENSBTAT00000038585.6
    Conserved Domains (2) summary
    smart00913
    Location:21 → 88
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    49320231..49488743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059886554.1 → XP_059742537.1  exportin-T isoform X1

  2. XM_059886555.1 → XP_059742538.1  exportin-T isoform X1

  3. XM_059886552.1 → XP_059742535.1  exportin-T isoform X1

  4. XM_059886553.1 → XP_059742536.1  exportin-T isoform X1

  5. XM_059886556.1 → XP_059742539.1  exportin-T isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials