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ZNF143 zinc finger protein 143 [ Bos taurus (domestic cattle) ]

Gene ID: 533243, updated on 12-Oct-2024

Summary

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Official Symbol
ZNF143provided by VGNC
Official Full Name
zinc finger protein 143provided by VGNC
Primary source
VGNC:VGNC:58348
See related
Ensembl:ENSBTAG00000016074
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ZNF143 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (43112175..43179232, complement)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441628 Neighboring gene WEE1 G2 checkpoint kinase Neighboring gene U6 spliceosomal RNA Neighboring gene CBY1-interacting BAR domain-containing protein 1-like Neighboring gene thymosin beta-4-like Neighboring gene small nucleolar RNA SNORA23 Neighboring gene importin 7 Neighboring gene large ribosomal subunit protein uL23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC165926

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 143
Names
selenocysteine tRNA gene transcription-activating factor
NP_001095624.1
XP_024831094.2
XP_024831095.2
XP_024831096.1
XP_059730767.1
XP_059730768.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102154.1 → NP_001095624.1  zinc finger protein 143

    See identical proteins and their annotated locations for NP_001095624.1

    Status: PROVISIONAL

    Source sequence(s)
    BC150013
    UniProtKB/Swiss-Prot
    A6QQW0
    UniProtKB/TrEMBL
    A0AAF6ZNL2
    Related
    ENSBTAP00000054556.3, ENSBTAT00000064671.3
    Conserved Domains (4) summary
    COG5048
    Location:239 → 297
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214 → 236
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:288 → 315
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:274 → 389
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    43112175..43179232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024975327.2 → XP_024831095.2  zinc finger protein 143 isoform X2

  2. XM_024975326.2 → XP_024831094.2  zinc finger protein 143 isoform X1

    Related
    ENSBTAP00000093092.1, ENSBTAT00000089501.1

  3. XM_024975328.2 → XP_024831096.1  zinc finger protein 143 isoform X3

    UniProtKB/TrEMBL
    A0AAF6ZNL2
    Related
    ENSBTAP00000021394.7, ENSBTAT00000021394.7
    Conserved Domains (3) summary
    COG5048
    Location:251 → 424
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:239 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl00342
    Location:82 → 192
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

  4. XM_059874784.1 → XP_059730767.1  zinc finger protein 143 isoform X3

  5. XM_059874785.1 → XP_059730768.1  zinc finger protein 143 isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6QQW0.1 GenPept UniProtKB/Swiss-Prot:A6QQW0

Gene LinkOut

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