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LGALS3BP galectin 3 binding protein [ Bos taurus (domestic cattle) ]

Gene ID: 531137, updated on 4-Oct-2024

Summary

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Official Symbol
LGALS3BPprovided by VGNC
Official Full Name
galectin 3 binding proteinprovided by VGNC
Primary source
VGNC:VGNC:30853
See related
BGD:BT25926; Ensembl:ENSBTAG00000001368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LGALS3BP in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (53416711..53426712)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 1 Neighboring gene calcium activated nucleotidase 1 Neighboring gene TIMP metallopeptidase inhibitor 2 Neighboring gene CEP295 N-terminal like Neighboring gene ubiquitin specific peptidase 36

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Endometrial expression of progesterone-induced blocking factor and galectins-1, -3, -9, and -3 binding protein in the luteal phase and early pregnancy in cattle. Okumu LA, et al. Physiol Genomics, 2011 Jul 27. PMID 21610087
  2. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The relative abundance of PIBF, LGALS1, LGALS3, LGALS3BP, and LGALS9 mRNA would display a differential expression pattern in the endometrium.
    Title: Endometrial expression of progesterone-induced blocking factor and galectins-1, -3, -9, and -3 binding protein in the luteal phase and early pregnancy in cattle.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC127786

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-3-binding protein
Names
lectin galactoside-binding soluble 3-binding protein
NP_001039781.1
XP_005221292.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046316.2 → NP_001039781.1  galectin-3-binding protein precursor

    See identical proteins and their annotated locations for NP_001039781.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105367
    UniProtKB/Swiss-Prot
    A7E3W2, Q2KJF4
    Conserved Domains (4) summary
    smart00225
    Location:171 → 243
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:261 → 358
    BACK; BTB And C-terminal Kelch
    smart00202
    Location:24 → 124
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:29 → 124
    SRCR; Scavenger receptor cysteine-rich domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    53416711..53426712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005221235.4 → XP_005221292.1  galectin-3-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005221292.1

    UniProtKB/Swiss-Prot
    A7E3W2, Q2KJF4
    UniProtKB/TrEMBL
    A0AAF6YIM3
    Related
    ENSBTAP00000001802.5, ENSBTAT00000001802.6
    Conserved Domains (4) summary
    smart00225
    Location:174 → 246
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:264 → 361
    BACK; BTB And C-terminal Kelch
    smart00202
    Location:27 → 127
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:32 → 127
    SRCR; Scavenger receptor cysteine-rich domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7E3W2.1 GenPept UniProtKB/Swiss-Prot:A7E3W2

Gene LinkOut

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