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HNRNPK heterogeneous nuclear ribonucleoprotein K [ Bos taurus (domestic cattle) ]

Gene ID: 528135, updated on 12-Oct-2024

Summary

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Official Symbol
HNRNPKprovided by VGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein Kprovided by VGNC
Primary source
VGNC:VGNC:29897
See related
BGD:BT17406; Ensembl:ENSBTAG00000021131
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
HNRPK
Orthologs
human mouse all
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Genomic context

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See HNRNPK in Genome Data Viewer
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (77218408..77229651, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene phosphoserine aminotransferase-like Neighboring gene Q-nucleotide N-glycosylase 1 Neighboring gene microRNA mir-7-2 Neighboring gene RecQ mediated genome instability 1 Neighboring gene solute carrier family 28 member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC127613

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein K
Names
hnRNP K

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034562.1 → NP_001029734.1  heterogeneous nuclear ribonucleoprotein K

    See identical proteins and their annotated locations for NP_001029734.1

    Status: PROVISIONAL

    Source sequence(s)
    BC102450
    UniProtKB/Swiss-Prot
    Q3T0D0
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144 → 213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387 → 460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    77218408..77229651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005210330.4 → XP_005210387.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_005210387.1

    UniProtKB/Swiss-Prot
    Q3T0D0
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144 → 213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387 → 460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  2. XM_015472618.3 → XP_015328104.1  heterogeneous nuclear ribonucleoprotein K isoform X4

    UniProtKB/TrEMBL
    A0A3Q1N9S5
    Related
    ENSBTAP00000067919.2, ENSBTAT00000080396.2
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120 → 189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363 → 436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  3. XM_005210334.5 → XP_005210391.1  heterogeneous nuclear ribonucleoprotein K isoform X3

    See identical proteins and their annotated locations for XP_005210391.1

    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120 → 189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363 → 436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  4. XM_010808097.4 → XP_010806399.1  heterogeneous nuclear ribonucleoprotein K isoform X2

    See identical proteins and their annotated locations for XP_010806399.1

    UniProtKB/TrEMBL
    A0A3Q1NEH2, A0AAF6Z995
    Related
    ENSBTAP00000028162.5, ENSBTAT00000028162.6
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144 → 213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387 → 460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  5. XM_005210331.5 → XP_005210388.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_005210388.1

    UniProtKB/Swiss-Prot
    Q3T0D0
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144 → 213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387 → 460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  6. XM_005210329.5 → XP_005210386.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    See identical proteins and their annotated locations for XP_005210386.1

    UniProtKB/Swiss-Prot
    Q3T0D0
    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:144 → 213
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:387 → 460
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  7. XM_059889119.1 → XP_059745102.1  heterogeneous nuclear ribonucleoprotein K isoform X1

    UniProtKB/Swiss-Prot
    Q3T0D0

  8. XM_024995763.2 → XP_024851531.1  heterogeneous nuclear ribonucleoprotein K isoform X3

    Conserved Domains (4) summary
    pfam08067
    Location:4 → 43
    ROKNT; ROKNT (NUC014) domain
    cd22432
    Location:42 → 105
    KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22433
    Location:120 → 189
    KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
    cd22434
    Location:363 → 436
    KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

  9. XM_059889120.1 → XP_059745103.1  heterogeneous nuclear ribonucleoprotein K isoform X5

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3T0D0.1 GenPept UniProtKB/Swiss-Prot:Q3T0D0

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