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LDB1 LIM domain binding 1 [ Bos taurus (domestic cattle) ]

Gene ID: 526472, updated on 4-Oct-2024

Summary

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Official Symbol
LDB1provided by VGNC
Official Full Name
LIM domain binding 1provided by VGNC
Primary source
VGNC:VGNC:55957
See related
BGD:BT17429; Ensembl:ENSBTAG00000005780
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LDB1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (22778547..22791911, complement)

Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL32-like Neighboring gene HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 Neighboring gene PPARG related coactivator 1 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene ubiquitin-ribosomal protein eS31 fusion protein-like Neighboring gene nucleolar and coiled-body phosphoprotein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables LIM domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain-binding protein 1; LOW QUALITY PROTEIN: LIM domain-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    22778547..22791911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882148.1 → XP_059738131.1  LOW QUALITY PROTEIN: LIM domain-binding protein 1

    Related
    ENSBTAP00000057298.2, ENSBTAT00000073299.2
Nucleotide Protein Strain
Heading Accession and Version

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