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EGR3 early growth response 3 [ Bos taurus (domestic cattle) ]

Gene ID: 526233, updated on 4-Oct-2024

Summary

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Official Symbol
EGR3provided by VGNC
Official Full Name
early growth response 3provided by VGNC
Primary source
VGNC:VGNC:28368
See related
BGD:BT28474; Ensembl:ENSBTAG00000019293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See EGR3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (69994728..70000031, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene cell cycle and apoptosis regulator 2 Neighboring gene bridging integrator 3 Neighboring gene phosphatidylethanolamine binding protein 4 Neighboring gene rho-related BTB domain-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289818.1 → NP_001276747.1  early growth response protein 3

    See identical proteins and their annotated locations for NP_001276747.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000008
    UniProtKB/TrEMBL
    A0A3Q1LVC9, E1BBZ7
    Related
    ENSBTAP00000059244.1, ENSBTAT00000073967.1
    Conserved Domains (3) summary
    sd00017
    Location:277 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:275 → 299
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:319 → 344
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    69994728..70000031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003586408.6 → XP_003586456.1  early growth response protein 3 isoform X1

    See identical proteins and their annotated locations for XP_003586456.1

    UniProtKB/TrEMBL
    A0AAA9T7E2, E1BBZ7
    Related
    ENSBTAP00000092522.1, ENSBTAT00000131687.1
    Conserved Domains (3) summary
    COG5048
    Location:265 → 321
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:239 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:237 → 261
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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