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SGMS2 sphingomyelin synthase 2 [ Bos taurus (domestic cattle) ]

Gene ID: 520954, updated on 4-Oct-2024

Summary

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Official Symbol
SGMS2provided by VGNC
Official Full Name
sphingomyelin synthase 2provided by VGNC
Primary source
VGNC:VGNC:34544
See related
BGD:BT21436; Ensembl:ENSBTAG00000016805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (17292831..17391274, complement)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene cytochrome P450 family 2 subfamily U member 1 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC112447148 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
NP_001192806.1
XP_005207672.1
XP_005207675.1
XP_005207676.1
XP_010804202.1
XP_015326982.1
XP_015326983.1
XP_015326984.1
XP_024848987.1
XP_059743495.1
XP_059743496.1
XP_059743497.1
XP_059743498.1
XP_059743499.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205877.3 → NP_001192806.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for NP_001192806.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000006
    UniProtKB/TrEMBL
    E1BNX6
    Related
    ENSBTAP00000022353.5, ENSBTAT00000022353.7
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    17292831..17391274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010805900.4 → XP_010804202.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_010804202.1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_005207619.5 → XP_005207676.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_005207676.1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_015471498.3 → XP_015326984.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_059887515.1 → XP_059743498.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6

  5. XM_015471497.3 → XP_015326983.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_059887514.1 → XP_059743497.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6

  7. XM_005207615.5 → XP_005207672.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_005207672.1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  8. XM_005207618.5 → XP_005207675.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_005207675.1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  9. XM_059887512.1 → XP_059743495.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6

  10. XM_059887513.1 → XP_059743496.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6

  11. XM_015471496.3 → XP_015326982.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  12. XM_059887516.1 → XP_059743499.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6

  13. XM_024993219.2 → XP_024848987.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    E1BNX6
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein Strain
Heading Accession and Version

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