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SNX12 sorting nexin 12 [ Bos taurus (domestic cattle) ]

Gene ID: 520739, updated on 4-Oct-2024

Summary

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Official Symbol
SNX12provided by VGNC
Official Full Name
sorting nexin 12provided by VGNC
Primary source
VGNC:VGNC:35093
See related
BGD:BT13119; Ensembl:ENSBTAG00000007871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SNX12 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (79555843..79618906)

Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene forkhead box O4 Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene solute carrier family 7 member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC143193

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103257.1 → NP_001096727.1  sorting nexin-12

    See identical proteins and their annotated locations for NP_001096727.1

    Status: PROVISIONAL

    Source sequence(s)
    BC150127
    UniProtKB/TrEMBL
    A0A3Q1MDW5, A0AAA9SQ30, A6QR61
    Related
    ENSBTAP00000010355.6, ENSBTAT00000010355.7
    Conserved Domains (1) summary
    cd07294
    Location:27 → 158
    PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    79555843..79618906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015461651.3 → XP_015317137.1  sorting nexin-12 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LVA8
    Related
    ENSBTAP00000064547.2, ENSBTAT00000084802.2
    Conserved Domains (1) summary
    cd07294
    Location:27 → 158
    PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

  2. XM_005228013.5 → XP_005228070.1  sorting nexin-12 isoform X3

    See identical proteins and their annotated locations for XP_005228070.1

    UniProtKB/TrEMBL
    A0A3Q1LVA8
    Related
    ENSBTAP00000072337.2, ENSBTAT00000083906.2
    Conserved Domains (1) summary
    cd07294
    Location:27 → 158
    PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

  3. XM_005228014.5 → XP_005228071.1  sorting nexin-12 isoform X4

    See identical proteins and their annotated locations for XP_005228071.1

    UniProtKB/TrEMBL
    A0AAA9SST0
    Related
    ENSBTAP00000087049.1, ENSBTAT00000101000.1
    Conserved Domains (1) summary
    cd07294
    Location:27 → 158
    PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

  4. XM_010821847.4 → XP_010820149.1  sorting nexin-12 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SQ30, A0AAA9TKA1
    Related
    ENSBTAP00000097627.1, ENSBTAT00000093408.1
    Conserved Domains (1) summary
    cd07294
    Location:27 → 158
    PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12
Nucleotide Protein Strain
Heading Accession and Version

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