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USP16 ubiquitin specific peptidase 16 [ Bos taurus (domestic cattle) ]

Gene ID: 519992, updated on 10-Oct-2024

Summary

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Official Symbol
USP16provided by VGNC
Official Full Name
ubiquitin specific peptidase 16provided by VGNC
Primary source
VGNC:VGNC:52842
See related
BGD:BT13890; Ensembl:ENSBTAG00000020122
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See USP16 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (7129410..7155326, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100851369 Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene RWD domain containing 2B Neighboring gene listerin E3 ubiquitin protein ligase 1 Neighboring gene histone H2B type 2-K1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Copy number variation of the USP16 gene and its association with milk traits in Chinese Holstein cattle. Wen Y, et al. Anim Biotechnol, 2022 Feb. PMID 32646283
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Copy number variation of the USP16 gene and its association with milk traits in Chinese Holstein cattle.
    Title: Copy number variation of the USP16 gene and its association with milk traits in Chinese Holstein cattle.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC143424

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 16
Names
deubiquitinating enzyme 16
ubiquitin thioesterase 16
ubiquitin thiolesterase 16
ubiquitin-specific-processing protease 16
NP_001070335.1
XP_005201178.2
XP_005201180.2
XP_005201184.2
XP_010799214.2
XP_024845182.1
XP_024845186.1
XP_024845189.1
XP_059740567.1
XP_059740578.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076867.1 → NP_001070335.1  ubiquitin carboxyl-terminal hydrolase 16

    See identical proteins and their annotated locations for NP_001070335.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123861
    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    Related
    ENSBTAP00000071692.2, ENSBTAT00000072297.2
    Conserved Domains (2) summary
    cd02667
    Location:625 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    7129410..7155326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005201121.4 → XP_005201178.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    UniProtKB/TrEMBL
    A0A452DJ00
    Related
    ENSBTAP00000026801.6, ENSBTAT00000026801.6
    Conserved Domains (2) summary
    cd02667
    Location:626 → 824
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  2. XM_024989414.2 → XP_024845182.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X2

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    Conserved Domains (2) summary
    cd02667
    Location:625 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  3. XM_010800912.4 → XP_010799214.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    UniProtKB/TrEMBL
    A0A452DJ00
    Conserved Domains (2) summary
    cd02667
    Location:626 → 824
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  4. XM_024989421.2 → XP_024845189.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X2

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    Conserved Domains (2) summary
    cd02667
    Location:625 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  5. XM_005201123.5 → XP_005201180.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    UniProtKB/TrEMBL
    A0A452DJ00
    Conserved Domains (2) summary
    cd02667
    Location:626 → 824
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  6. XM_024989418.2 → XP_024845186.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X2

    UniProtKB/Swiss-Prot
    F1N2B1, Q08DA3
    Conserved Domains (2) summary
    cd02667
    Location:625 → 823
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:63 → 124
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  7. XM_059884584.1 → XP_059740567.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    UniProtKB/TrEMBL
    A0A452DJ00

  8. XM_059884595.1 → XP_059740578.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X3

  9. XM_005201127.4 → XP_005201184.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MCV9
    Conserved Domains (2) summary
    cd02667
    Location:530 → 728
    Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam02148
    Location:8 → 29
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08DA3.2 GenPept UniProtKB/Swiss-Prot:Q08DA3

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