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PIGV phosphatidylinositol glycan anchor biosynthesis class V [ Bos taurus (domestic cattle) ]

Gene ID: 519213, updated on 10-Oct-2024

Summary

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Official Symbol
PIGVprovided by VGNC
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class Vprovided by VGNC
Primary source
VGNC:VGNC:32880
See related
BGD:BT18884; Ensembl:ENSBTAG00000009796
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See PIGV in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (126392479..126402240, complement)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 18 Neighboring gene stratifin Neighboring gene AT-rich interaction domain 1A Neighboring gene uncharacterized LOC112443408 Neighboring gene ribosomal protein S6 kinase A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2
NP_001179434.1
XP_010800870.1
XP_024857488.1
XP_059730504.1
XP_059730505.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192505.1 → NP_001179434.1  GPI mannosyltransferase 2

    See identical proteins and their annotated locations for NP_001179434.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000002
    UniProtKB/TrEMBL
    A0AAA9T200, E1B9Z8
    Related
    ENSBTAP00000090424.1, ENSBTAT00000089047.1
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    126392479..126402240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059874522.1 → XP_059730505.1  GPI mannosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0AAA9T4D4
    Related
    ENSBTAP00000091516.1, ENSBTAT00000089050.1

  2. XM_010802568.4 → XP_010800870.1  GPI mannosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_010800870.1

    UniProtKB/TrEMBL
    A0AAA9T200, E1B9Z8
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  3. XM_025001720.2 → XP_024857488.1  GPI mannosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T200, E1B9Z8
    Conserved Domains (1) summary
    pfam04188
    Location:8 → 493
    Mannosyl_trans2; Mannosyltransferase (PIG-V)

  4. XM_059874521.1 → XP_059730504.1  GPI mannosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T200
Nucleotide Protein Strain
Heading Accession and Version

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