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SYNJ2 synaptojanin 2 [ Bos taurus (domestic cattle) ]

Gene ID: 518435, updated on 4-Oct-2024

Summary

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Official Symbol
SYNJ2provided by VGNC
Official Full Name
synaptojanin 2provided by VGNC
Primary source
VGNC:VGNC:35528
See related
BGD:BT18702; Ensembl:ENSBTAG00000000817
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (94544427..94653073)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2
XP_005211133.1
XP_010807022.1
XP_010807023.1
XP_010807024.1
XP_024852879.1
XP_024852880.1
XP_024852881.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    94544427..94653073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024997111.2 → XP_024852879.1  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T263, F1N1U1
    Related
    ENSBTAP00000038897.4, ENSBTAT00000039096.5
    Conserved Domains (4) summary
    pfam08952
    Location:873 → 1009
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:532 → 862
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl26464
    Location:1147 → 1460
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:27 → 485
    Syja_N; SacI homology domain

  2. XM_024997112.2 → XP_024852880.1  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LUB9, A0AAA9T263
    Related
    ENSBTAP00000060719.1, ENSBTAT00000083000.2
    Conserved Domains (4) summary
    pfam08952
    Location:873 → 1009
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:532 → 862
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl26464
    Location:1035 → 1345
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:27 → 485
    Syja_N; SacI homology domain

  3. XM_024997113.2 → XP_024852881.1  synaptojanin-2 isoform X4

    UniProtKB/TrEMBL
    A0AAA9SG74, A0AAA9T263
    Related
    ENSBTAP00000082668.1, ENSBTAT00000090203.1
    Conserved Domains (3) summary
    cl00490
    Location:532 → 862
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:873 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl27434
    Location:27 → 485
    Syja_N; SacI homology domain

  4. XM_010808720.4 → XP_010807022.1  synaptojanin-2 isoform X2

    See identical proteins and their annotated locations for XP_010807022.1

    UniProtKB/TrEMBL
    A0AAA9T263, A0AAA9TLI3
    Related
    ENSBTAP00000098070.1, ENSBTAT00000096134.1
    Conserved Domains (3) summary
    pfam02383
    Location:22 → 303
    Syja_N; SacI homology domain
    pfam08952
    Location:834 → 970
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:493 → 823
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  5. XM_010808721.4 → XP_010807023.1  synaptojanin-2 isoform X5

    See identical proteins and their annotated locations for XP_010807023.1

    UniProtKB/TrEMBL
    A0AAA9T263
    Conserved Domains (3) summary
    pfam02383
    Location:5 → 102
    Syja_N; SacI homology domain
    pfam08952
    Location:633 → 769
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:292 → 622
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  6. XM_010808722.4 → XP_010807024.1  synaptojanin-2 isoform X5

    See identical proteins and their annotated locations for XP_010807024.1

    UniProtKB/TrEMBL
    A0AAA9T263
    Conserved Domains (3) summary
    pfam02383
    Location:5 → 102
    Syja_N; SacI homology domain
    pfam08952
    Location:633 → 769
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:292 → 622
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  7. XM_005211076.5 → XP_005211133.1  synaptojanin-2 isoform X5

    See identical proteins and their annotated locations for XP_005211133.1

    UniProtKB/TrEMBL
    A0AAA9T263
    Conserved Domains (3) summary
    pfam02383
    Location:5 → 102
    Syja_N; SacI homology domain
    pfam08952
    Location:633 → 769
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:292 → 622
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version

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