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FOXN1 forkhead box N1 [ Bos taurus (domestic cattle) ]

Gene ID: 516724, updated on 10-Oct-2024

Summary

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Official Symbol
FOXN1provided by VGNC
Official Full Name
forkhead box N1provided by VGNC
Primary source
VGNC:VGNC:29095
See related
BGD:BT13543; Ensembl:ENSBTAG00000013095
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See FOXN1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (19977229..20005159)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene solute carrier family 13 member 2 Neighboring gene unc-119 lipid binding chaperone Neighboring gene phosphatidylinositol glycan anchor biosynthesis class S

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein N1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192452.1 → NP_001179381.1  forkhead box protein N1

    See identical proteins and their annotated locations for NP_001179381.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000019
    UniProtKB/TrEMBL
    A0A3Q1MCA7, A0A3Q1MQU0
    Related
    ENSBTAP00000066392.1, ENSBTAT00000071459.2
    Conserved Domains (1) summary
    pfam00250
    Location:269 → 356
    Forkhead; Forkhead domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    19977229..20005159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005220109.5 → XP_005220166.1  forkhead box protein N1 isoform X1

    See identical proteins and their annotated locations for XP_005220166.1

    UniProtKB/TrEMBL
    A0A3Q1MQU0, E1BJ25
    Conserved Domains (1) summary
    pfam00250
    Location:270 → 357
    Forkhead; Forkhead domain

  2. XM_005220108.4 → XP_005220165.1  forkhead box protein N1 isoform X1

    See identical proteins and their annotated locations for XP_005220165.1

    UniProtKB/TrEMBL
    A0A3Q1MQU0, E1BJ25
    Related
    ENSBTAP00000017410.4, ENSBTAT00000017410.5
    Conserved Domains (1) summary
    pfam00250
    Location:270 → 357
    Forkhead; Forkhead domain

  3. XM_059878051.1 → XP_059734034.1  forkhead box protein N1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MCA7
Nucleotide Protein Strain
Heading Accession and Version

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