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ALG13 putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [ Bos taurus (domestic cattle) ]

Gene ID: 515282, updated on 4-Oct-2024

Summary

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Gene symbol
ALG13
Gene description
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
See related
BGD:BT14056
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
CXorf45
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Genomic context

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See ALG13 in Genome Data Viewer
Location:
chromosome: X
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (59878634..59951355)

Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene doublecortin Neighboring gene cAMP-regulated phosphoprotein 19-like Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG13 homolog Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene TRPC5 opposite strand Neighboring gene retrotransposon Gag like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog; putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Names
ALG13, UDP-N-acetylglucosaminyltransferase subunit
asparagine-linked glycosylation 13 homolog
XP_024844471.1
XP_024844472.1
XP_024844475.1
XP_024844476.1
XP_024844478.1
XP_059739659.1
XP_059739660.1
XP_059739661.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    59878634..59951355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024988704.2 → XP_024844472.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    Conserved Domains (3) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease
    cl28087
    Location:636 → 894
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  2. XM_024988708.2 → XP_024844476.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X5

    Conserved Domains (3) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease
    cl28087
    Location:593 → 873
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  3. XM_024988707.2 → XP_024844475.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

    Conserved Domains (3) summary
    cd04508
    Location:276 → 324
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 126
    OTU; OTU-like cysteine protease
    cl28087
    Location:622 → 880
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  4. XM_024988710.2 → XP_024844478.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X6

    Conserved Domains (2) summary
    cd04508
    Location:228 → 276
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl28087
    Location:574 → 832
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  5. XM_059883676.1 → XP_059739659.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

  6. XM_059883677.1 → XP_059739660.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X6

  7. XM_024988703.2 → XP_024844471.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    Conserved Domains (3) summary
    cd04508
    Location:293 → 341
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:36 → 143
    OTU; OTU-like cysteine protease
    cl28087
    Location:639 → 897
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  8. XM_059883678.1 → XP_059739661.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X6

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001080275.1: Suppressed sequence

    Description
    NM_001080275.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from zebrafish: otul (GeneID:557181).
Nucleotide Protein Strain
Heading Accession and Version

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