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GHDC GH3 domain containing [ Bos taurus (domestic cattle) ]

Gene ID: 515225, updated on 17-Aug-2024

Summary

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Official Symbol
GHDCprovided by VGNC
Official Full Name
GH3 domain containingprovided by VGNC
Primary source
VGNC:VGNC:29347
See related
BGD:BT25390; Ensembl:ENSBTAG00000000666
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
D11LGP1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (42307202..42311660, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 4 Neighboring gene uncharacterized LOC132343075 Neighboring gene hypocretin neuropeptide precursor Neighboring gene signal transducer and activator of transcription 5B Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid-amino acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GH3 domain-containing protein
Names
LGP1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075703.1 → NP_001069171.1  GH3 domain-containing protein precursor

    See identical proteins and their annotated locations for NP_001069171.1

    Status: PROVISIONAL

    Source sequence(s)
    BT026535
    UniProtKB/TrEMBL
    A0AAA9TXI4, Q0V7N5
    Related
    ENSBTAP00000102180.1, ENSBTAT00000107528.1
    Conserved Domains (2) summary
    cl21606
    Location:189 → 529
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:53 → 498
    GH3; GH3 auxin-responsive promoter

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    42307202..42311660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010816248.4 → XP_010814550.1  GH3 domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0AAA9TXI4, F1MRP0
    Related
    ENSBTAP00000000876.6, ENSBTAT00000000876.7
    Conserved Domains (2) summary
    cl21606
    Location:189 → 534
    PLN02247; indole-3-acetic acid-amido synthetase
    pfam03321
    Location:53 → 503
    GH3; GH3 auxin-responsive promoter
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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