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GAR1 GAR1 ribonucleoprotein [ Bos taurus (domestic cattle) ]

Gene ID: 515057, updated on 4-Oct-2024

Summary

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Official Symbol
GAR1provided by VGNC
Official Full Name
GAR1 ribonucleoproteinprovided by VGNC
Primary source
VGNC:VGNC:29251
See related
BGD:BT25360; Ensembl:ENSBTAG00000000748
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
NOLA1
Orthologs
human mouse all
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Genomic context

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See GAR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (15597104..15604855, complement)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 3 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog Neighboring gene complement factor I Neighboring gene glycine cleavage system H protein, mitochondrial-like Neighboring gene phospholipase A2 group XIIA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snoRNA guided rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit 1
Names
GAR1 ribonucleoprotein homolog
nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035303.1 → NP_001030380.1  H/ACA ribonucleoprotein complex subunit 1

    See identical proteins and their annotated locations for NP_001030380.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021549
    UniProtKB/TrEMBL
    Q58DP8
    Related
    ENSBTAP00000000992.5, ENSBTAT00000000992.6
    Conserved Domains (1) summary
    pfam04410
    Location:61 → 163
    Gar1; Gar1/Naf1 RNA binding region

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    15597104..15604855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005207605.5 → XP_005207662.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005207662.1

    Conserved Domains (1) summary
    pfam04410
    Location:57 → 162
    Gar1; Gar1/Naf1 RNA binding region

  2. XM_005207603.2 → XP_005207660.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005207660.1

    Conserved Domains (1) summary
    pfam04410
    Location:57 → 162
    Gar1; Gar1/Naf1 RNA binding region

  3. XM_059887504.1 → XP_059743487.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

  4. XM_005207604.4 → XP_005207661.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005207661.1

    Conserved Domains (1) summary
    pfam04410
    Location:57 → 162
    Gar1; Gar1/Naf1 RNA binding region

  5. XM_059887505.1 → XP_059743488.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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