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CCS copper chaperone for superoxide dismutase [ Bos taurus (domestic cattle) ]

Gene ID: 515022, updated on 4-Oct-2024

Summary

Official Symbol
CCSprovided by VGNC
Official Full Name
copper chaperone for superoxide dismutaseprovided by VGNC
Primary source
VGNC:VGNC:26991
See related
BGD:BT25087; Ensembl:ENSBTAG00000004343
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See CCS in Genome Data Viewer
Location:
chromosome: 29
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (44628698..44642432)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene cathepsin F Neighboring gene coiled-coil domain containing 87 Neighboring gene RNA binding motif protein 14 Neighboring gene RNA binding motif protein 4

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General protein information

Preferred Names
copper chaperone for superoxide dismutase
Names
superoxide dismutase copper chaperone

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046187.2NP_001039652.1  copper chaperone for superoxide dismutase

    See identical proteins and their annotated locations for NP_001039652.1

    Status: PROVISIONAL

    Source sequence(s)
    BC112838
    UniProtKB/TrEMBL
    Q2KHY4
    Conserved Domains (2) summary
    cd00305
    Location:89191
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
    cd00371
    Location:1573
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    44628698..44642432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882906.1XP_059738889.1  copper chaperone for superoxide dismutase isoform X2

  2. XM_005227075.4XP_005227132.1  copper chaperone for superoxide dismutase isoform X1

    UniProtKB/TrEMBL
    E1BE86
    Related
    ENSBTAP00000005683.3, ENSBTAT00000005683.4
    Conserved Domains (2) summary
    cd00305
    Location:89224
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
    cd00371
    Location:1573
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
  3. XM_005227076.3XP_005227133.1  copper chaperone for superoxide dismutase isoform X3

    See identical proteins and their annotated locations for XP_005227133.1

    UniProtKB/TrEMBL
    A0AAA9TPX1
    Related
    ENSBTAP00000100440.1, ENSBTAT00000120707.1
    Conserved Domains (3) summary
    PLN02957
    Location:14253
    PLN02957; copper, zinc superoxide dismutase
    cd00305
    Location:89227
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
    cd00371
    Location:1573
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...