U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LHX9 LIM homeobox 9 [ Bos taurus (domestic cattle) ]

Gene ID: 515012, updated on 4-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
LHX9provided by VGNC
Official Full Name
LIM homeobox 9provided by VGNC
Primary source
VGNC:VGNC:30878
See related
Ensembl:ENSBTAG00000013499
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LHX9 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (76858125..76878930)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441872 Neighboring gene DENN domain containing 1B Neighboring gene chromosome 16 C1orf53 homolog Neighboring gene uncharacterized LOC112441798 Neighboring gene NIMA related kinase 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LIM/homeobox protein Lhx9
Names
LIM homeobox protein 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024544.1 → NP_001019715.1  LIM/homeobox protein Lhx9

    See identical proteins and their annotated locations for NP_001019715.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021834
    UniProtKB/TrEMBL
    F1N6S3, Q58CW3
    Conserved Domains (3) summary
    cd09377
    Location:110 → 168
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:42 → 105
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:252 → 304
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    76858125..76878930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015475271.3 → XP_015330757.1  LIM/homeobox protein Lhx9 isoform X2

    UniProtKB/Swiss-Prot
    A0JNI8
    Conserved Domains (3) summary
    cd09377
    Location:120 → 178
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:52 → 115
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:262 → 314
    Homeobox; Homeobox domain

  2. XM_024976206.2 → XP_024831974.1  LIM/homeobox protein Lhx9 isoform X5

    UniProtKB/TrEMBL
    A0A452DJH3
    Related
    ENSBTAP00000050628.4, ENSBTAT00000054943.4
    Conserved Domains (3) summary
    cd09377
    Location:120 → 178
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:52 → 115
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:262 → 303
    Homeobox; Homeobox domain

  3. XM_010813552.4 → XP_010811854.1  LIM/homeobox protein Lhx9 isoform X1

    See identical proteins and their annotated locations for XP_010811854.1

    UniProtKB/Swiss-Prot
    A0JNI8, Q0V893
    Related
    ENSBTAP00000041150.5, ENSBTAT00000043591.5
    Conserved Domains (3) summary
    cd09377
    Location:129 → 187
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:61 → 124
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:271 → 323
    Homeobox; Homeobox domain

  4. XM_005217352.5 → XP_005217409.1  LIM/homeobox protein Lhx9 isoform X4

    See identical proteins and their annotated locations for XP_005217409.1

    Conserved Domains (3) summary
    cd09377
    Location:129 → 187
    LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
    cd09469
    Location:61 → 124
    LIM1_Lhx2; The first LIM domain of Lhx2
    pfam00046
    Location:271 → 312
    Homeobox; Homeobox domain

  5. XM_059875374.1 → XP_059731357.1  LIM/homeobox protein Lhx9 isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0JNI8.2 GenPept UniProtKB/Swiss-Prot:A0JNI8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials