U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

WDR3 WD repeat domain 3 [ Bos taurus (domestic cattle) ]

Gene ID: 514870, updated on 4-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
WDR3provided by VGNC
Official Full Name
WD repeat domain 3provided by VGNC
Primary source
VGNC:VGNC:36890
See related
BGD:BT18080; Ensembl:ENSBTAG00000019937
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See WDR3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (25250692..25290062, complement)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344987 Neighboring gene small ribosomal subunit protein eS6-like Neighboring gene sperm associated antigen 17 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene uncharacterized LOC132344850 Neighboring gene uncharacterized LOC132344851

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192388.3 → NP_001179317.1  WD repeat-containing protein 3

    See identical proteins and their annotated locations for NP_001179317.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000003
    UniProtKB/TrEMBL
    A0AAA9T673, E1BM03
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    25250692..25290062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005204029.5 → XP_005204086.1  WD repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005204086.1

    UniProtKB/TrEMBL
    A0AAA9T673, E1BM03
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_005204028.5 → XP_005204085.1  WD repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005204085.1

    UniProtKB/TrEMBL
    A0AAA9T673, E1BM03
    Related
    ENSBTAP00000026561.5, ENSBTAT00000026561.7
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_024988555.2 → XP_024844323.1  WD repeat-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T673, E1BM03
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.