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ZNF205 zinc finger protein 205 [ Bos taurus (domestic cattle) ]

Gene ID: 514765, updated on 12-Oct-2024

Summary

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Official Symbol
ZNF205provided by VGNC
Official Full Name
zinc finger protein 205provided by VGNC
Primary source
VGNC:VGNC:37224
See related
BGD:BT28828; Ensembl:ENSBTAG00000005572
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ZNF205 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (2557375..2569820)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene interleukin-32-like Neighboring gene zinc finger and SCAN domain containing 10 Neighboring gene zinc finger protein 213 Neighboring gene caspase 16 Neighboring gene transfer RNA arginine (anticodon CCG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor RHIT

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034473.2 → NP_001029645.1  transcriptional repressor RHIT

    See identical proteins and their annotated locations for NP_001029645.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123477
    UniProtKB/Swiss-Prot
    Q58DK7
    Related
    ENSBTAP00000089319.1, ENSBTAT00000091834.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:320 → 345
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:124 → 183
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    2557375..2569820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881291.1 → XP_059737274.1  transcriptional repressor RHIT isoform X1

    UniProtKB/TrEMBL
    G3X6I8

  2. XM_059881292.1 → XP_059737275.1  transcriptional repressor RHIT isoform X2

    UniProtKB/Swiss-Prot
    Q58DK7

  3. XM_059881293.1 → XP_059737276.1  transcriptional repressor RHIT isoform X3

  4. XM_005224441.4 → XP_005224498.2  transcriptional repressor RHIT isoform X1

    UniProtKB/TrEMBL
    G3X6I8
    Related
    ENSBTAP00000007323.6, ENSBTAT00000007323.6
    Conserved Domains (4) summary
    COG5048
    Location:367 → 526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:123 → 154
    KRAB; KRAB box
    pfam13465
    Location:321 → 346
    zf-H2C2_2; Zinc-finger double domain

  5. XM_024984830.2 → XP_024840598.1  transcriptional repressor RHIT isoform X4

    UniProtKB/TrEMBL
    A0A3Q1LK24
    Related
    ENSBTAP00000056941.1, ENSBTAT00000072709.2
    Conserved Domains (4) summary
    COG5048
    Location:332 → 491
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:386 → 406
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:123 → 162
    KRAB; KRAB box
    pfam13465
    Location:286 → 311
    zf-H2C2_2; Zinc-finger double domain

  6. XM_005224443.5 → XP_005224500.2  transcriptional repressor RHIT isoform X1

    UniProtKB/TrEMBL
    G3X6I8
    Conserved Domains (4) summary
    COG5048
    Location:367 → 526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:123 → 154
    KRAB; KRAB box
    pfam13465
    Location:321 → 346
    zf-H2C2_2; Zinc-finger double domain

  7. XM_005224444.5 → XP_005224501.2  transcriptional repressor RHIT isoform X1

    UniProtKB/TrEMBL
    G3X6I8
    Conserved Domains (4) summary
    COG5048
    Location:367 → 526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:123 → 154
    KRAB; KRAB box
    pfam13465
    Location:321 → 346
    zf-H2C2_2; Zinc-finger double domain

  8. XM_005224445.5 → XP_005224502.2  transcriptional repressor RHIT isoform X2

    UniProtKB/Swiss-Prot
    Q58DK7
    Related
    ENSBTAP00000078130.1, ENSBTAT00000103337.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:320 → 345
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:124 → 183
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58DK7.1 GenPept UniProtKB/Swiss-Prot:Q58DK7

Gene LinkOut

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