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CFAP36 cilia and flagella associated protein 36 [ Bos taurus (domestic cattle) ]

Gene ID: 513777, updated on 4-Oct-2024

Summary

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Official Symbol
CFAP36provided by VGNC
Official Full Name
cilia and flagella associated protein 36provided by VGNC
Primary source
VGNC:VGNC:27242
See related
BGD:BT21157; Ensembl:ENSBTAG00000000542
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
CCDC104
Orthologs
human mouse all
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Genomic context

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See CFAP36 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (38211858..38241695)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene prdX-deacylase domain-containing protein 1 Neighboring gene coiled-coil domain containing 88A Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene uncharacterized LOC107132925 Neighboring gene polyribonucleotide nucleotidyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC128282

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 36
Names
coiled-coil domain containing 104
coiled-coil domain-containing protein 104

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034453.2 → NP_001029625.1  cilia- and flagella-associated protein 36

    See identical proteins and their annotated locations for NP_001029625.1

    Status: PROVISIONAL

    Source sequence(s)
    BC102896
    UniProtKB/Swiss-Prot
    Q3ZC62
    Conserved Domains (2) summary
    pfam11527
    Location:15 → 119
    ARL2_Bind_BART; The ARF-like 2 binding protein BART
    cl26511
    Location:152 → 309
    Neuromodulin_N; Gap junction protein N-terminal region

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    38211858..38241695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005212606.4 → XP_005212663.1  cilia- and flagella-associated protein 36 isoform X1

    See identical proteins and their annotated locations for XP_005212663.1

    UniProtKB/TrEMBL
    A0A3Q1LXT2
    Related
    ENSBTAP00000000705.6, ENSBTAT00000000705.7
    Conserved Domains (2) summary
    pfam11527
    Location:15 → 119
    ARL2_Bind_BART; The ARF-like 2 binding protein BART
    cl26511
    Location:152 → 339
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_015473433.3 → XP_015328919.1  cilia- and flagella-associated protein 36 isoform X2

    Conserved Domains (2) summary
    pfam11527
    Location:15 → 119
    ARL2_Bind_BART; The ARF-like 2 binding protein BART
    cl26511
    Location:152 → 329
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ZC62.1 GenPept UniProtKB/Swiss-Prot:Q3ZC62

Gene LinkOut

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